RchiOBHm_Chr2g0123371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006421
Physical Location & Seq
Forward (+)
36521460 .. 36523223
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49567

Sequence Viewer

Length: 297 bp
ATGGCTCGAACCAAGGTAACCCCTCGCAGGGGCGTCAATCAACGCCGTGTTCTCTCTTTGGAGGAAGAAGGTCGTCAGGCGGCCACTAGAGCTGGGCTTACTCGTCCATGGGACCATCGTCCTATCCGTGAGCGTACCCGCAGTCCCCTCCTCTGCCTCGTCGCTCTCCCAGACTGCATCCCGGAGAGTCTTCTTCCTCACCAGCTGCTCGTGCTCCTCGGCCTGTGGCCACCCTGGAAAGCTTGTCGGATTCAATTGATGATTTGCGCTCCTCTCTCCGCGATGGTATTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.23

Weight (kDa)

11.01

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 281
AciI CCGC 3 cut(s) 80, 139, 279
AcoI YGGCCR 2 cut(s) 81, 227
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 27, 28, 29
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 3 cut(s) 92, 205, 242
AluI AGCT 3 cut(s) 92, 205, 242
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 3 cut(s) 81, 220, 227
ApeKI GCWGC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 229
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 192
BccI CCATC 2 cut(s) 123, 277
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 235
BcnI CCSGG 1 cut(s) 182
BfaI CTAG 1 cut(s) 87
BisI GCNGC 2 cut(s) 81, 206
BlsI GCNGC 2 cut(s) 82, 207
Bme1390I CCNGG 2 cut(s) 182, 235
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 182, 235
BmsI GCATC 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 12, 107, 217, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 28, 29
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 4 cut(s) 12, 107, 217, 233
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 27, 28, 29
BseRI GAGGAG 3 cut(s) 140, 206, 261
BseXI GCAGC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 83, 222, 229
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 2 cut(s) 125, 129
BslI CCNNNNNNNGG 3 cut(s) 27, 28, 29
BsmFI GGGAC 2 cut(s) 125, 129
BsnI GGCC 3 cut(s) 83, 222, 229
Bsp1286I GDGCHC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 3 cut(s) 80, 139, 279
BspANI GGCC 3 cut(s) 83, 222, 229
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 12, 107, 217, 233
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 2 cut(s) 12, 107
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 89, 211
BstNI CCWGG 1 cut(s) 235
BstPAI GACNNNNGTC 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 180, 233
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 182
BsuRI GGCC 3 cut(s) 83, 222, 229
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 177
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 108
CviJI RGCY 8 cut(s) 5, 83, 92, 97, 205, 222, 229, 242
CviKI_1 RGCY 8 cut(s) 5, 83, 92, 97, 205, 222, 229, 242
CviQI GTAC 1 cut(s) 135
EaeI YGGCCR 2 cut(s) 81, 227
Eco130I CCWWGG 2 cut(s) 12, 107
Eco47I GGWCC 1 cut(s) 112
Eco91I GGTNACC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 12, 107
ErhI CCWWGG 2 cut(s) 12, 107
FaeI CATG 1 cut(s) 111
FaiI YATR 2 cut(s) 109, 292
FaqI GGGAC 2 cut(s) 125, 129
FatI CATG 1 cut(s) 107
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 81, 206
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 81, 206
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 268
GluI GCNGC 2 cut(s) 81, 206
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 3 cut(s) 83, 222, 229
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 111
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 2 cut(s) 187, 250
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 211
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 111
HspAI GCGC 1 cut(s) 267
LmnI GCTCC 2 cut(s) 219, 274
LpnPI CCDG 9 cut(s) 13, 62, 78, 183, 195, 215, 220, 236, 247
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 16
MboII GAAGA 3 cut(s) 77, 182, 185
MfeI CAATTG 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 8 cut(s) 33, 55, 158, 161, 167, 207, 227, 282
Mox20I TGGCCA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 229
Msp20I TGGCCA 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 182, 235
MunI CAATTG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 89, 211
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 107
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 113
NmeAIII GCCGAG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 2 cut(s) 82, 207
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshAI GACNNNNGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 233
PspEI GGTNACC 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SatI GCNGC 2 cut(s) 81, 206
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 182, 235
SduI GDGCHC 1 cut(s) 216
SetI ASST 5 cut(s) 18, 73, 94, 207, 244
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 112
Sse9I AATT 1 cut(s) 254
SsiI CCGC 3 cut(s) 80, 139, 279
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 180, 233
StyI CCWWGG 2 cut(s) 12, 107
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 254
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 250
TseI GCWGC 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 112
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.