Rroxscaffold_4G00292500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006421
Physical Location & Seq
Forward (+)
12783117 .. 12790007
6891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292500.1

Sequence Viewer

Length: 510 bp
ATGATTCCAGTGCTGGCCATTAATCATGGTGCTGGTGCTATGGATGACAGTTCGAAGCTAAGGTTCGGTCGAGGCTTCGGGCTGCTTCGGCCATGGGATTGTGATGTTAGGCTTAGCCCTATGCTGATGAGTTGGGGACCTCCCCAATCTAGCTTAGTTTCTTTAGTCCTCTTCCCCCCGCCTGCTCGTGCTCCTCGACCCGTGGCCACCGTGGAAAGCTTGTCCGACTCTATTGATGCTCTACGTTCCTCTCTCCGCGATGGTATTATGGTGACAGATTGGCGAGTCACATGCATGATCGATTACATCTCCGACATGAACCTCTCTTTGATGCGCCGTCACACCGCAATGAACAAACTTGAGCAGGAAATCCATAACATGCATGCGAGTCATCCTCCCGGGTTTCCTCGCAAGGAAGCTGCTACGTCACACCATAAGGACCCTCCTCCGGAGGCCGAAACCAGCAAGAGGGCTGCCACTCGCCCGCATACCGCTCCTCCAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.72

Weight (kDa)

8.71

Isoelectric Point (pI)

66.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 494
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 448
AciI CCGC 5 cut(s) 179, 256, 345, 485, 492
AcoI YGGCCR 3 cut(s) 15, 89, 204
AfiI CCNNNNNNNGG 2 cut(s) 448, 468
AluBI AGCT 4 cut(s) 58, 153, 219, 419
AluI AGCT 4 cut(s) 58, 153, 219, 419
Alw21I GWGCWC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 4 cut(s) 15, 89, 204, 453
ApeKI GCWGC 3 cut(s) 82, 419, 473
AseI ATTAAT 1 cut(s) 21
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 137, 439
AsuC2I CCSGG 2 cut(s) 399, 400
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 137, 439
BalI TGGCCA 2 cut(s) 17, 206
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 3 cut(s) 69, 406, 460
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BcnI CCSGG 2 cut(s) 399, 400
BfaI CTAG 1 cut(s) 150
BisI GCNGC 3 cut(s) 83, 420, 474
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 3 cut(s) 84, 421, 475
Bme1390I CCNGG 2 cut(s) 399, 400
Bme18I GGWCC 2 cut(s) 137, 439
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 137, 439
BmiI GGNNCC 2 cut(s) 138, 441
BmrFI CCNGG 2 cut(s) 399, 400
BmsI GCATC 2 cut(s) 226, 321
BplI GAGNNNNNCTC 2 cut(s) 379, 411
Bpu10I CCTNAGC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 2 cut(s) 399, 400
Bsa29I ATCGAT 1 cut(s) 300
BsaJI CCNNGG 4 cut(s) 92, 201, 210, 398
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 1 cut(s) 481
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 468
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 4 cut(s) 92, 201, 210, 398
BseGI GGATG 2 cut(s) 49, 391
BseLI CCNNNNNNNGG 2 cut(s) 448, 468
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 8
BseRI GAGGAG 3 cut(s) 183, 435, 486
BseXI GCAGC 3 cut(s) 69, 406, 460
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 17, 91, 206, 455
BshVI ATCGAT 1 cut(s) 300
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 399, 449
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 448, 468
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 4 cut(s) 17, 91, 206, 455
BsoBI CYCGRG 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 448
Bsp143I GATC 1 cut(s) 297
Bsp1720I GCTNAGC 1 cut(s) 113
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 5 cut(s) 179, 256, 345, 485, 492
BspANI GGCC 4 cut(s) 17, 91, 206, 455
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 448
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 138, 441
BspT104I TTCGAA 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 1 cut(s) 8
BssECI CCNNGG 4 cut(s) 92, 201, 210, 398
BssMI GATC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 92
Bst2BI CACGAG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 50, 211
Bst6I CTCTTC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 4 cut(s) 15, 183, 384, 485
BstDEI CTNAG 3 cut(s) 59, 113, 154
BstDSI CCRYGG 3 cut(s) 92, 201, 210
BstF5I GGATG 2 cut(s) 49, 391
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 3 cut(s) 294, 382, 386
BstSCI CCNGG 2 cut(s) 397, 398
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 69, 406, 460
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 4 cut(s) 17, 91, 206, 455
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 3 cut(s) 92, 201, 210
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 49, 391
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 4 cut(s) 15, 183, 384, 485
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 137, 439
Cfr9I CCCGGG 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 300
CviAII CATG 7 cut(s) 26, 93, 291, 295, 316, 379, 383
DdeI CTNAG 3 cut(s) 59, 113, 154
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
EaeI YGGCCR 3 cut(s) 15, 89, 204
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 137, 439
Eco88I CYCGRG 1 cut(s) 398
EcoO109I RGGNCCY 2 cut(s) 137, 439
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 2 cut(s) 296, 384
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 7 cut(s) 29, 96, 294, 298, 319, 382, 386
FaqI GGGAC 1 cut(s) 150
FatI CATG 7 cut(s) 25, 92, 290, 294, 315, 378, 382
FauI CCCGC 2 cut(s) 186, 492
Fnu4HI GCNGC 3 cut(s) 83, 420, 474
FokI GGATG 2 cut(s) 56, 378
Fsp4HI GCNGC 3 cut(s) 83, 420, 474
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 335
GluI GCNGC 3 cut(s) 83, 420, 474
HaeIII GGCC 4 cut(s) 17, 91, 206, 455
HapII CCGG 2 cut(s) 399, 449
HhaI GCGC 1 cut(s) 336
Hin1II CATG 7 cut(s) 29, 96, 294, 298, 319, 382, 386
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 4 cut(s) 4, 227, 285, 388
HpaII CCGG 2 cut(s) 399, 449
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 226, 313
Hpy188III TCNNGA 1 cut(s) 449
HpyCH4III ACNGT 2 cut(s) 50, 211
HpyCH4IV ACGT 2 cut(s) 244, 425
HpyCH4V TGCA 2 cut(s) 294, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 59, 113, 154
HpySE526I ACGT 2 cut(s) 244, 425
Hsp92II CATG 7 cut(s) 29, 96, 294, 298, 319, 382, 386
HspAI GCGC 1 cut(s) 334
Kpn2I TCCGGA 1 cut(s) 448
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 196, 499
LpnPI CCDG 7 cut(s) 18, 21, 195, 350, 412, 462, 475
Lsp1109I GCAGC 3 cut(s) 69, 406, 460
LweI GCATC 2 cut(s) 226, 321
MaeI CTAG 1 cut(s) 150
MaeII ACGT 2 cut(s) 244, 425
MaeIII GTNAC 4 cut(s) 271, 286, 338, 426
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 494
MboI GATC 1 cut(s) 297
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 2 cut(s) 17, 206
MluNI TGGCCA 2 cut(s) 17, 206
MlyI GAGTC 3 cut(s) 221, 294, 397
MmeI TCCRAC 2 cut(s) 249, 336
Mox20I TGGCCA 2 cut(s) 17, 206
Mph1103I ATGCAT 2 cut(s) 296, 384
MroI TCCGGA 1 cut(s) 448
MscI TGGCCA 2 cut(s) 17, 206
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 2 cut(s) 293, 347
Msp20I TGGCCA 2 cut(s) 17, 206
MspI CCGG 2 cut(s) 399, 449
MspR9I CCNGG 2 cut(s) 399, 400
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 88
NciI CCSGG 2 cut(s) 399, 400
NcoI CCATGG 1 cut(s) 92
NdeII GATC 1 cut(s) 297
NlaIII CATG 7 cut(s) 29, 96, 294, 298, 319, 382, 386
NlaIV GGNNCC 2 cut(s) 138, 441
NmuCI GTSAC 4 cut(s) 271, 286, 338, 426
NsiI ATGCAT 2 cut(s) 296, 384
NspI RCATGY 3 cut(s) 294, 382, 386
NspV TTCGAA 1 cut(s) 53
PaeI GCATGC 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 3 cut(s) 84, 421, 475
PleI GAGTC 3 cut(s) 221, 293, 396
PpsI GAGTC 3 cut(s) 221, 293, 396
PpuMI RGGWCCY 2 cut(s) 137, 439
PshBI ATTAAT 1 cut(s) 21
Psp5II RGGWCCY 2 cut(s) 137, 439
PspN4I GGNNCC 2 cut(s) 138, 441
PspPI GGNCC 2 cut(s) 137, 439
PspPPI RGGWCCY 2 cut(s) 137, 439
RseI CAYNNNNRTG 2 cut(s) 293, 347
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 83, 420, 474
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 2 cut(s) 137, 439
SchI GAGTC 3 cut(s) 221, 294, 397
ScrFI CCNGG 2 cut(s) 399, 400
SduI GDGCHC 1 cut(s) 193
SetI ASST 9 cut(s) 60, 65, 142, 155, 221, 247, 324, 421, 428
SfaNI GCATC 2 cut(s) 226, 321
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 2 cut(s) 137, 439
SmaI CCCGGG 1 cut(s) 400
SmiMI CAYNNNNRTG 2 cut(s) 293, 347
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 386
SsiI CCGC 5 cut(s) 179, 256, 345, 485, 492
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 397, 398
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 50, 211
TaiI ACGT 2 cut(s) 247, 428
TaqI TCGA 4 cut(s) 53, 70, 196, 300
TaqII GACCGA 1 cut(s) 56
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 4 cut(s) 271, 286, 338, 426
TseI GCWGC 3 cut(s) 82, 419, 473
Tsp45I GTSAC 4 cut(s) 271, 286, 338, 426
TspDTI ATGAA 2 cut(s) 332, 365
TspMI CCCGGG 1 cut(s) 398
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 137, 439
VspI ATTAAT 1 cut(s) 21
XceI RCATGY 3 cut(s) 294, 382, 386
XmaI CCCGGG 1 cut(s) 398
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 2 cut(s) 296, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.