Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006421

Physical Location & Seq

Genomic Coordinates Reverse (-)

38948075 .. 38948605

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTCGAACCAAGGTTACCCCTCGCAGGGGCGTCAATCAACGCCGTGTTCTCTCTTTGGAAGAAGAAGGTCGTCAAGCGGCCACTAGAGCTGGACTTACTCGTCCATGGGACCATCGTCCTATCCGTGAGCGTACCCGCAGTCCCCCTCCTCTGCCTCGTCGCTCTCCCAGACTGCATCCCGGAGAGTCTTCTTCCTCACCAGCTGCTCGTACTCCTCGGCCTATGGCCACCCTGGAAAGCTTGTCGGATTCGATTGATGATTTGCGTTCCTCTCTCCGCGATGGTATTATGGTGACAGATTGGAGAGTCAATTGCATAATCGATTACATCTCTGAGATGAACTGCTCTTTGATCCGCTGTCACACTGCAATAAACAAGCTTGCTCAGGAAGTCAATAACTTGCAGAGTTATCCTCCTGGGTTTCCTCGCAAGGACGCTACTGCATCACAACATGAGGACCCGCCTCCGAAGGCTGAAACCAGCAAGAGGGCTGCCACTCGCCCGCATACTGCTCCTCCAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.78

Weight (kDa)

10.36

Isoelectric Point (pI)

72.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006421)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c31g0501341 RchiOBHm_Chr1g0371701 RchiOBHm_Chr1g0371961 RchiOBHm_Chr2g0121361 RchiOBHm_Chr2g0123371 RchiOBHm_Chr2g0125601 RchiOBHm_Chr2g0125911 RchiOBHm_Chr2g0126281 RchiOBHm_Chr2g0126661 RchiOBHm_Chr2g0133861 RchiOBHm_Chr2g0147521 RchiOBHm_Chr2g0148851 RchiOBHm_Chr2g0156331 RchiOBHm_Chr2g0158501 RchiOBHm_Chr2g0159001 RchiOBHm_Chr3g0464581
rosa_multiflora	Rmu_sc0001192.1_g000013 Rmu_sc0006388.1_g000025 Rmu_sc0010640.1_g000009
rosa_roxburghii	Rroxscaffold_4G00292500 Rroxscaffold_4G00321780
rosa_samantha	Rh7DG327200
rosa_wichuraiana	Rw1G025310 Rw3G020540 Rw5G033820 Rw7G028260 Rw7G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	102
AccII	CGCG	1 cut(s)	282
AciI	CCGC	6 cut(s)	80, 139, 280, 358, 464, 506
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	2 cut(s)	81, 228
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	136, 214
AfiI	CCNNNNNNNGG	4 cut(s)	27, 28, 29, 489
AjnI	CCWGG	2 cut(s)	234, 418
AluBI	AGCT	4 cut(s)	92, 206, 243, 382
AluI	AGCT	4 cut(s)	92, 206, 243, 382
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	3 cut(s)	81, 221, 228
ApeKI	GCWGC	2 cut(s)	206, 494
AspS9I	GGNCC	2 cut(s)	112, 460
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	192, 307
AvaII	GGWCC	2 cut(s)	112, 460
BalI	TGGCCA	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	193, 481
BccI	CCATC	2 cut(s)	123, 278
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	236, 420
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	3 cut(s)	81, 207, 495
BlsI	GCNGC	3 cut(s)	82, 208, 496
Bme1390I	CCNGG	3 cut(s)	183, 236, 420
Bme18I	GGWCC	2 cut(s)	112, 460
BmgT120I	GGNCC	2 cut(s)	112, 460
BmiI	GGNNCC	2 cut(s)	113, 462
BmrFI	CCNGG	3 cut(s)	183, 236, 420
BmsI	GCATC	2 cut(s)	187, 455
BoxI	GACNNNNGTC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
Bpu10I	CCTNAGC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	5 cut(s)	12, 107, 218, 234, 419
BsaXI	ACNNNNNCTCC	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 28, 29, 489
BseBI	CCWGG	2 cut(s)	236, 420
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	5 cut(s)	12, 107, 218, 234, 419
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	4 cut(s)	27, 28, 29, 489
BseMII	CTCAG	2 cut(s)	327, 401
BseRI	GAGGAG	3 cut(s)	141, 207, 507
BseXI	GCAGC	2 cut(s)	193, 481
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	83, 223, 230
BshVI	ATCGAT	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	125, 129
BslI	CCNNNNNNNGG	4 cut(s)	27, 28, 29, 489
BsmFI	GGGAC	2 cut(s)	125, 129
BsnI	GGCC	3 cut(s)	83, 223, 230
Bsp143I	GATC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	6 cut(s)	80, 139, 280, 358, 464, 506
BspANI	GGCC	3 cut(s)	83, 223, 230
BspCNI	CTCAG	2 cut(s)	328, 400
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	113, 462
BspPI	GGATC	1 cut(s)	349
BssECI	CCNNGG	5 cut(s)	12, 107, 218, 234, 419
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	12, 107
Bst2UI	CCWGG	2 cut(s)	236, 420
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	384, 506
BstDEI	CTNAG	2 cut(s)	336, 387
BstDSI	CCRYGG	1 cut(s)	107
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	236, 420
BstPAI	GACNNNNGTC	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	181, 234, 418
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	193, 481
BstV2I	GAAGAC	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	83, 223, 230
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	384, 506
Cfr13I	GGNCC	2 cut(s)	112, 460
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	2 cut(s)	22, 446
Csp6I	GTAC	2 cut(s)	135, 213
CviAII	CATG	2 cut(s)	108, 455
CviQI	GTAC	2 cut(s)	135, 213
DdeI	CTNAG	2 cut(s)	336, 387
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DrdI	GACNNNNNNGTC	1 cut(s)	102
DseDI	GACNNNNNNGTC	1 cut(s)	102
EaeI	YGGCCR	2 cut(s)	81, 228
Eco130I	CCWWGG	2 cut(s)	12, 107
Eco47I	GGWCC	2 cut(s)	112, 460
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	234, 418
EcoT14I	CCWWGG	2 cut(s)	12, 107
ErhI	CCWWGG	2 cut(s)	12, 107
FaeI	CATG	2 cut(s)	111, 458
FaiI	YATR	6 cut(s)	109, 227, 293, 320, 456, 510
FaqI	GGGAC	2 cut(s)	125, 129
FatI	CATG	2 cut(s)	107, 454
FauI	CCCGC	3 cut(s)	146, 471, 513
Fnu4HI	GCNGC	3 cut(s)	81, 207, 495
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	81, 207, 495
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	3 cut(s)	81, 207, 495
HaeIII	GGCC	3 cut(s)	83, 223, 230
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	22, 446
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	111, 458
HindIII	AAGCTT	2 cut(s)	241, 380
HinfI	GANTC	3 cut(s)	188, 251, 309
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	192, 307
Hpy188I	TCNGA	3 cut(s)	250, 337, 471
Hpy188III	TCNNGA	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	2 cut(s)	62, 466
HpyCH4V	TGCA	5 cut(s)	178, 318, 371, 406, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	336, 387
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	111, 458
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	2 cut(s)	193, 481
LweI	GCATC	2 cut(s)	187, 455
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	16, 295, 362
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	4 cut(s)	74, 77, 183, 186
MfeI	CAATTG	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	1 cut(s)	313
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	197, 318
MmeI	TCCRAC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	206, 360
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	183, 236, 420
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	236, 420
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	111, 458
NlaIV	GGNNCC	2 cut(s)	113, 462
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	295, 362
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	82, 208, 496
PleI	GAGTC	2 cut(s)	196, 317
PpsI	GAGTC	2 cut(s)	196, 317
PpuMI	RGGWCCY	1 cut(s)	460
PshAI	GACNNNNGTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	234, 418
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	234, 418
PspN4I	GGNNCC	2 cut(s)	113, 462
PspPI	GGNCC	2 cut(s)	112, 460
PspPPI	RGGWCCY	1 cut(s)	460
PsrI	GAACNNNNNNTAC	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	136, 214
RsaNI	GTAC	2 cut(s)	135, 213
SatI	GCNGC	3 cut(s)	81, 207, 495
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	2 cut(s)	112, 460
SchI	GAGTC	2 cut(s)	197, 318
ScrFI	CCNGG	3 cut(s)	183, 236, 420
SetI	ASST	6 cut(s)	18, 73, 94, 208, 245, 384
SfaNI	GCATC	2 cut(s)	187, 455
SinI	GGWCC	2 cut(s)	112, 460
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	6 cut(s)	80, 139, 280, 358, 464, 506
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	181, 234, 418
StyI	CCWWGG	2 cut(s)	12, 107
TaqI	TCGA	3 cut(s)	7, 254, 324
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	251
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	295, 362
TseI	GCWGC	2 cut(s)	206, 494
Tsp45I	GTSAC	2 cut(s)	295, 362
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	112, 460
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.