RchiOBHm_Chr1g0328971

Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
18405957 .. 18410138
4182 bp
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UTR
Exon/CDS
Intron
PRQ55832

Sequence Viewer

Length: 306 bp
ATGAGGGTTCAACGAGTTCCTTTTCTAACGTCAGTCATTATAAGTGTTTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACTTTTGCTTCCGATGTTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGAGGAACTAAATCTGTTGAACACCTCCAACCTGCTTCCCGATGCTGCAAAGAGTATGTTAGTTTTTCAATTACCTTTTGAAGGCACCTAG

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

9.69

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 299
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 11, 235, 284, 296
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 106
AlwI GGATC 1 cut(s) 155
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 127, 260
AxyI CCTNAGG 1 cut(s) 213
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 139, 247
BfaI CTAG 2 cut(s) 98, 304
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 2 cut(s) 128, 261
BlsI GCNGC 2 cut(s) 129, 262
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 3 cut(s) 86, 190, 247
BsaBI GATNNNNATC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 159
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 139, 247
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 296
BsnI GGCC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 299
BssMI GATC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 294
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 139, 247
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 187
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 132
CviAII CATG 1 cut(s) 56
CviJI RGCY 3 cut(s) 104, 130, 187
CviKI_1 RGCY 3 cut(s) 104, 130, 187
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 41, 57, 272
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 128, 261
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 128, 261
FspBI CTAG 2 cut(s) 98, 304
GluI GCNGC 2 cut(s) 128, 261
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 1 cut(s) 59
HinfI GANTC 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 123, 154
Hpy188III TCNNGA 2 cut(s) 215, 254
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 77, 181, 263
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 101, 109
LpnPI CCDG 3 cut(s) 144, 200, 260
Lsp1109I GCAGC 2 cut(s) 139, 247
LweI GCATC 3 cut(s) 86, 190, 247
MaeI CTAG 2 cut(s) 98, 304
MaeII ACGT 1 cut(s) 29
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 2 cut(s) 117, 284
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 4 cut(s) 132, 211, 222, 250
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 301
NspI RCATGY 1 cut(s) 59
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 129, 262
PsiI TTATAA 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 301
SacI GAGCTC 1 cut(s) 106
SatI GCNGC 2 cut(s) 128, 261
Sau3AI GATC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 106
SetI ASST 6 cut(s) 32, 106, 242, 249, 292, 305
SfaNI GCATC 3 cut(s) 86, 190, 247
SgeI CNNG 9 cut(s) 26, 68, 110, 143, 179, 188, 227, 259, 266
Sse9I AATT 2 cut(s) 117, 284
SspMI CTAG 2 cut(s) 98, 304
SstI GAGCTC 1 cut(s) 106
TaiI ACGT 1 cut(s) 32
TasI AATT 2 cut(s) 117, 284
TfiI GAWTC 1 cut(s) 194
TseI GCWGC 2 cut(s) 127, 260
XagI CCTNNNNNAGG 1 cut(s) 294
XceI RCATGY 1 cut(s) 59
XspI CTAG 2 cut(s) 98, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.