Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Forward (+)

10795886 .. 10798629

Gene Structure 2744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAGACTGTAGAGTACAAACATGCTCTTTTGGTAAAGACTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTCGAGGACTGTTGCTTCCGATATTGATCTACTTGTTGCTCCTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGCAGAAAAGGTGACCGTGGTATTTCCTATGAGATTCAAGGACTCTATTGACATTGTTTTTGCAACTTCCTTCCCGCAGGTACATCCAAAGTACTTCTGCAACCTCTGGCCAAGGACTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

101

Amino Acids

11.49

Weight (kDa)

9.84

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	5 - 85	3.6e-08	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	2 cut(s)	152, 290
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	3 cut(s)	17, 264, 275
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	73
AoxI	GGCC	2 cut(s)	152, 290
ApeKI	GCWGC	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AsuHPI	GGTGA	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmcAI	AGTACT	1 cut(s)	275
BmsI	GCATC	2 cut(s)	53, 157
BpiI	GAAGAC	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	198, 293
Bse21I	CCTNAGG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	198, 293
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	154, 292
BsiHKAI	GWGCWC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	154, 292
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	154, 292
BspCNI	CTCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	198, 293
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	10, 112, 199
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	154, 292
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	16, 263, 274
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	4 cut(s)	71, 97, 154, 292
CviKI_1	RGCY	4 cut(s)	71, 97, 154, 292
CviQI	GTAC	3 cut(s)	16, 263, 274
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	2 cut(s)	152, 290
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	180
Eco91I	GGTNACC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	1 cut(s)	26
FaiI	YATR	3 cut(s)	24, 212, 304
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	154, 292
Hin1II	CATG	1 cut(s)	26
HinfI	GANTC	4 cut(s)	161, 216, 224, 298
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	90, 121
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	3 cut(s)	10, 112, 199
HpyCH4V	TGCA	4 cut(s)	44, 148, 245, 282
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	3 cut(s)	68, 76, 145
LpnPI	CCDG	5 cut(s)	111, 156, 167, 245, 274
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	53, 157
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	292
MluCI	AATT	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	292
MlyI	GAGTC	2 cut(s)	218, 292
MnlI	CCTC	3 cut(s)	99, 189, 296
Mox20I	TGGCCA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	292
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	161, 216
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	2 cut(s)	218, 292
PpsI	GAGTC	2 cut(s)	218, 292
Psp124BI	GAGCTC	1 cut(s)	73
PspEI	GGTNACC	1 cut(s)	193
RsaI	GTAC	3 cut(s)	17, 264, 275
RsaNI	GTAC	3 cut(s)	16, 263, 274
SacI	GAGCTC	1 cut(s)	73
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	127
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	2 cut(s)	218, 292
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	4 cut(s)	73, 195, 264, 288
SfaNI	GCATC	2 cut(s)	53, 157
SfcI	CTRYAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	10, 112, 199
TaqI	TCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	84
TatI	WGTACW	2 cut(s)	15, 273
TfiI	GAWTC	2 cut(s)	161, 216
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.