Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Forward (+)

27620630 .. 27624169

Gene Structure 3540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAAAACCCACACATTGTGCTGCTTTCGGTTTCGCTGCCGGAAACTGTGTTCTTGAGTGGGCTTCCTGCTGGGGCTATAGAGGCTATAAAGGCTGCGTATCGATCAGTAATGCAGATTCTTGACCCACATAGAGATGGGTTTAAACTTCCTATAGATGAAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACTTTTGCTTCCGATGTTGATCCACTTGTTGCTCTTGCGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGAGGAACTAAAATCTGTTGAACGCCTCCAACCTGCTTCCCGATGCTGCAAGAGAAAATGCCGCGCTGCTCCTGCTGCGGTTCATGCAACAGTTCAGGCTGTGGTTCATGCAGCGGTAAATGCTGTGGTTACAAGGGTTCATGATGCGGTCCTGGGAACCGTAATTCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCGATGTTACTGCTCATGCCCCCCCGATCCCGTTACTGCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

192

Amino Acids

20.7

Weight (kDa)

9.43

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	373
AccII	CGCG	1 cut(s)	396
AciI	CCGC	4 cut(s)	394, 410, 446, 479
AclWI	GGATC	2 cut(s)	272, 550
AcoI	YGGCCR	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	483
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	2 cut(s)	221, 573
AluI	AGCT	2 cut(s)	221, 573
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	272, 550
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	8 cut(s)	22, 37, 95, 244, 378, 398, 407, 443
AspLEI	GCGC	2 cut(s)	298, 398
AspS9I	GGNCC	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	8 cut(s)	9, 24, 82, 256, 365, 385, 394, 455
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	1 cut(s)	485
BfaI	CTAG	2 cut(s)	215, 574
BfmI	CTRYAG	2 cut(s)	78, 153
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	9 cut(s)	23, 38, 96, 245, 379, 394, 399, 408, 444
BlsI	GCNGC	9 cut(s)	24, 39, 97, 246, 380, 395, 400, 409, 445
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	4 cut(s)	203, 307, 365, 466
BpuEI	CTTGAG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	485
BseCI	ATCGAT	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	344
BseXI	GCAGC	8 cut(s)	9, 24, 82, 256, 365, 385, 394, 455
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	41
BsnI	GGCC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	104, 277, 555
BspACI	CCGC	4 cut(s)	394, 410, 446, 479
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	343
BspDI	ATCGAT	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	272, 550
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	104, 277, 555
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	49, 424, 493
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	298, 398
BstKTI	GATC	3 cut(s)	107, 280, 558
BstMBI	GATC	3 cut(s)	104, 277, 555
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 404, 407, 416, 452
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	2 cut(s)	78, 153
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	8 cut(s)	9, 24, 82, 256, 365, 385, 394, 455
Bsu15I	ATCGAT	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	304
BsuTUI	ATCGAT	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	2 cut(s)	298, 398
Cfr13I	GGNCC	1 cut(s)	481
ClaI	ATCGAT	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	5 cut(s)	173, 416, 440, 473, 545
CviJI	RGCY	9 cut(s)	64, 77, 86, 95, 221, 247, 304, 431, 573
CviKI_1	RGCY	9 cut(s)	64, 77, 86, 95, 221, 247, 304, 431, 573
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	106, 279, 557
DpnII	GATC	3 cut(s)	104, 277, 555
DraI	TTTAAA	1 cut(s)	145
DraIII	CACNNNGTG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	260
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	5 cut(s)	176, 419, 443, 476, 548
FaiI	YATR	9 cut(s)	80, 89, 132, 155, 174, 417, 441, 474, 546
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	5 cut(s)	172, 415, 439, 472, 544
Fnu4HI	GCNGC	9 cut(s)	23, 38, 96, 245, 379, 394, 399, 408, 444
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	9 cut(s)	23, 38, 96, 245, 379, 394, 399, 408, 444
FspBI	CTAG	2 cut(s)	215, 574
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	2 cut(s)	297, 397
GluI	GCNGC	9 cut(s)	23, 38, 96, 245, 379, 394, 399, 408, 444
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	2 cut(s)	298, 398
Hin1II	CATG	5 cut(s)	176, 419, 443, 476, 548
Hin6I	GCGC	2 cut(s)	296, 396
HinP1I	GCGC	2 cut(s)	296, 396
HinfI	GANTC	2 cut(s)	118, 311
HpaII	CCGG	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	240, 271
Hpy188III	TCNNGA	5 cut(s)	55, 122, 332, 372, 473
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	3 cut(s)	49, 424, 493
HpyCH4V	TGCA	6 cut(s)	115, 194, 381, 419, 443, 568
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 404, 407, 416, 452
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	176, 419, 443, 476, 548
HspAI	GCGC	2 cut(s)	296, 396
Kzo9I	GATC	3 cut(s)	104, 277, 555
LmnI	GCTCC	3 cut(s)	218, 226, 406
Lsp1109I	GCAGC	8 cut(s)	9, 24, 82, 256, 365, 385, 394, 455
LweI	GCATC	4 cut(s)	203, 307, 365, 466
MaeI	CTAG	2 cut(s)	215, 574
MaeIII	GTNAC	3 cut(s)	460, 535, 561
MalI	GATC	3 cut(s)	106, 279, 557
MboI	GATC	3 cut(s)	104, 277, 555
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	234, 495
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	5 cut(s)	76, 249, 328, 339, 368
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	485
MssI	GTTTAAAC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 404, 407, 416, 452
NdeII	GATC	3 cut(s)	104, 277, 555
NlaIII	CATG	5 cut(s)	176, 419, 443, 476, 548
NlaIV	GGNNCC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	176
PagI	TCATGA	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	118, 311
PkrI	GCNGC	9 cut(s)	24, 39, 97, 246, 380, 395, 400, 409, 445
PmeI	GTTTAAAC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	481
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	9 cut(s)	23, 38, 96, 245, 379, 394, 399, 408, 444
Sau3AI	GATC	3 cut(s)	104, 277, 555
Sau96I	GGNCC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	3 cut(s)	223, 367, 575
SfaNI	GCATC	4 cut(s)	203, 307, 365, 466
SfcI	CTRYAG	2 cut(s)	78, 153
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	234, 495
SsiI	CCGC	4 cut(s)	394, 410, 446, 479
SspMI	CTAG	2 cut(s)	215, 574
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	49, 424, 493
TaqI	TCGA	1 cut(s)	103
TasI	AATT	2 cut(s)	234, 495
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	118, 311
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	8 cut(s)	22, 37, 95, 244, 378, 398, 407, 443
TspDTI	ATGAA	5 cut(s)	17, 174, 404, 428, 461
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	2 cut(s)	215, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.