Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Reverse (-)

62811447 .. 62815093

Gene Structure 3647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAAAACCCACACATTGTGCTGCTTTCGGTTTCGCTGCCGGAAACTGTGTTCTTGAGTGGGCTTCCTGCTGGGGCTATAGAGGCTATAAAGGCAGCGTATGGATCAATGGAGGTTCAACGAGTTCCTTTTCTAAGTGTTGTTGAGCCTTTTGGATTGCTTGCTTCTCGTATAAAACCCGCCTGGTTCTTTCTCGTTATTTGGATTGGTTTAGATGATCTTTTAGTGGATTATAAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACTTTTGCTTGCGATGTTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGAGGAACTAAAATCTGTTGAACGCCTCCAACCTGCTTCCCGATGCTGCAAAGAGTATAAATGCCGCGCTGCTCCTGCTGCGGTTCATGCAACAGTTCAGTCTGTGGTTCATGCAGCGGTAAATGCTGTGGTTACAAGGGTTCATGATGCGGTCCATGGAACCGTAATTCGTGTTTCAGTTGCCCTTCAAAAAACTGAACTCCCACCTCCAATAAGGAGGAGAAAGGGAACCAAAGCAGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

216

Amino Acids

23.7

Weight (kDa)

9.75

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	445
AccII	CGCG	1 cut(s)	471
AciI	CCGC	5 cut(s)	180, 469, 485, 521, 554
AclWI	GGATC	2 cut(s)	112, 344
AcoI	YGGCCR	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	332
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	119, 425, 593
AjnI	CCWGG	1 cut(s)	182
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	112, 344
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	8 cut(s)	22, 37, 95, 316, 450, 473, 482, 518
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	8 cut(s)	9, 24, 107, 328, 437, 460, 469, 530
BciT130I	CCWGG	1 cut(s)	184
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	78, 647
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	9 cut(s)	23, 38, 96, 317, 451, 469, 474, 483, 519
BlsI	GCNGC	9 cut(s)	24, 39, 97, 318, 452, 470, 475, 484, 520
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	565, 634
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	4 cut(s)	275, 379, 437, 541
BpuEI	CTTGAG	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	559
Bse21I	CCTNAGG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	637
BseXI	GCAGC	8 cut(s)	9, 24, 107, 328, 437, 460, 469, 530
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	41
BsnI	GGCC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	104, 217, 349
Bsp19I	CCATGG	1 cut(s)	559
BspACI	CCGC	5 cut(s)	180, 469, 485, 521, 554
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	565, 634
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	2 cut(s)	112, 344
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	3 cut(s)	104, 217, 349
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	49, 499, 568
BstC8I	GCNNGC	3 cut(s)	162, 321, 340
BstDEI	CTNAG	2 cut(s)	134, 402
BstDSI	CCRYGG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	3 cut(s)	107, 220, 352
BstMBI	GATC	3 cut(s)	104, 217, 349
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 92, 479, 482, 491, 527
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	78, 647
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	8 cut(s)	9, 24, 107, 328, 437, 460, 469, 530
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	559
BtgZI	GCGATG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	162, 321, 340
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	5 cut(s)	245, 491, 515, 548, 560
CviJI	RGCY	7 cut(s)	64, 77, 86, 148, 293, 319, 376
CviKI_1	RGCY	7 cut(s)	64, 77, 86, 148, 293, 319, 376
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	134, 402
DpnI	GATC	3 cut(s)	106, 219, 351
DpnII	GATC	3 cut(s)	104, 217, 349
DraIII	CACNNNGTG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	374
Ecl136II	GAGCTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	559
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	5 cut(s)	248, 494, 518, 551, 563
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	5 cut(s)	244, 490, 514, 547, 559
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	9 cut(s)	23, 38, 96, 317, 451, 469, 474, 483, 519
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	9 cut(s)	23, 38, 96, 317, 451, 469, 474, 483, 519
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	9 cut(s)	23, 38, 96, 317, 451, 469, 474, 483, 519
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	5 cut(s)	248, 494, 518, 551, 563
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	4 cut(s)	55, 404, 444, 548
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	3 cut(s)	49, 499, 568
HpyCH4V	TGCA	5 cut(s)	266, 370, 453, 494, 518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 92, 479, 482, 491, 527
HpyF3I	CTNAG	2 cut(s)	134, 402
Hsp92II	CATG	5 cut(s)	248, 494, 518, 551, 563
HspAI	GCGC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	104, 217, 349
LmnI	GCTCC	3 cut(s)	290, 298, 481
Lsp1109I	GCAGC	8 cut(s)	9, 24, 107, 328, 437, 460, 469, 530
LweI	GCATC	4 cut(s)	275, 379, 437, 541
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	3 cut(s)	106, 219, 351
MboI	GATC	3 cut(s)	104, 217, 349
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	306, 570
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	8 cut(s)	76, 106, 321, 400, 411, 440, 615, 621
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	6 cut(s)	83, 92, 479, 482, 491, 527
NcoI	CCATGG	1 cut(s)	559
NdeII	GATC	3 cut(s)	104, 217, 349
NlaIII	CATG	5 cut(s)	248, 494, 518, 551, 563
NlaIV	GGNNCC	2 cut(s)	565, 634
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	9 cut(s)	24, 39, 97, 318, 452, 470, 475, 484, 520
PsiI	TTATAA	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	565, 634
PspPI	GGNCC	1 cut(s)	556
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	295
SatI	GCNGC	9 cut(s)	23, 38, 96, 317, 451, 469, 474, 483, 519
Sau3AI	GATC	3 cut(s)	104, 217, 349
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	117, 295, 439, 613
SfaNI	GCATC	4 cut(s)	275, 379, 437, 541
SfcI	CTRYAG	2 cut(s)	78, 647
SinI	GGWCC	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	306, 570
SsiI	CCGC	5 cut(s)	180, 469, 485, 521, 554
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	3 cut(s)	49, 499, 568
TasI	AATT	2 cut(s)	306, 570
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	383
TseI	GCWGC	8 cut(s)	22, 37, 95, 316, 450, 473, 482, 518
TspDTI	ATGAA	4 cut(s)	17, 479, 503, 536
VpaK11BI	GGWCC	1 cut(s)	556
XceI	RCATGY	1 cut(s)	248
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.