Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Reverse (-)

21924677 .. 21929119

Gene Structure 4443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATGAAGCCGGAGTCGTTCCTTCTTGACTCCTTGTTAAATCGCCTCCACAAGTTCGTTCCTTTCCTCCCCAATTCAATCAAATTCTCTCTCTTTCTCACTCCTCCATTGATTCTGATCACTTTCTTGTCTTCTGATTCTGCAGCATTGAAAAAGCAGTGGAGGTGGACTACCATTGAGCCGAGTTCGCTGACGTCCGGTGACGAGATGAAAAACCCACACATTGTGCTGCTTTCGGTTTCGCTGCCGGCCCCACCTCTGGAAACTGTGTTCTTGAGTGGGCTTCCTGCTGGGGCTATAGAGGCTGCGTATGGATCAGTAGTGCAGATTCTTGACCCACATAGAGATGGGTTTAATCTTACATTGAAGCTCAATCTCTCTAAACTTCCTACAGATGAAGGTTCAACGAGTTCCTTTTCTAAGGACAGTGTCAAAGTCAGTGAATGCAATCAACATTTCTCGCTTGTTATGTATAGGAGTATATTGGGTAGAATGATGAATTTTCGGAGAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGATGCTAGGAGCTCCATTGAGAGTAATTGTGAAGCAGCCTGCTTTGAGGACTTTTGCTTCCGTTGTTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGGAGGAACTAAAATCTGTTGAACGCCTCCAACCTGCTTCCCGATGCTGCAAAGGGTATGTTAGTTTTTCAATTACCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

254

Amino Acids

28.3

Weight (kDa)

9.49

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	721
AclWI	GGATC	2 cut(s)	322, 620
AcoI	YGGCCR	1 cut(s)	650
AcsI	RAATTY	2 cut(s)	83, 499
AcyI	GRCGYC	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	6 cut(s)	78, 151, 367, 405, 701, 750
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	2 cut(s)	370, 569
AluI	AGCT	2 cut(s)	370, 569
Alw21I	GWGCWC	1 cut(s)	571
AlwI	GGATC	2 cut(s)	322, 620
AoxI	GGCC	2 cut(s)	249, 650
ApeKI	GCWGC	6 cut(s)	143, 229, 244, 305, 592, 726
ApoI	RAATTY	2 cut(s)	83, 499
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	6 cut(s)	155, 216, 231, 292, 604, 713
BccI	CCATC	1 cut(s)	341
BclI	TGATCA	1 cut(s)	117
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	3 cut(s)	141, 297, 390
BfuAI	ACCTGC	1 cut(s)	721
BisI	GCNGC	6 cut(s)	144, 230, 245, 306, 593, 727
BlsI	GCNGC	6 cut(s)	145, 231, 246, 307, 594, 728
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	252
BmsI	GCATC	4 cut(s)	549, 551, 655, 713
BpiI	GAAGAC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	116
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	692
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	6 cut(s)	155, 216, 231, 292, 604, 713
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	251, 652
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	3 cut(s)	11, 198, 248
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	251, 652
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	117, 314, 625
BspANI	GGCC	2 cut(s)	251, 652
BspCNI	CTCAG	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	2 cut(s)	322, 620
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssMI	GATC	3 cut(s)	117, 314, 625
BssNI	GRCGYC	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	268, 428
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	249, 597
BstDEI	CTNAG	2 cut(s)	420, 678
BstKTI	GATC	3 cut(s)	120, 317, 628
BstMBI	GATC	3 cut(s)	117, 314, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 302
BstNSI	RCATGY	1 cut(s)	524
BstSFI	CTRYAG	3 cut(s)	141, 297, 390
BstV1I	GCAGC	6 cut(s)	155, 216, 231, 292, 604, 713
BstV2I	GAAGAC	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	2 cut(s)	251, 652
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	164, 433, 445
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	2 cut(s)	249, 597
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	1 cut(s)	521
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	2 cut(s)	420, 678
DpnI	GATC	3 cut(s)	119, 316, 627
DpnII	GATC	3 cut(s)	117, 314, 625
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	650
Ecl136II	GAGCTC	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	571
Eco53kI	GAGCTC	1 cut(s)	569
Eco81I	CCTNAGG	1 cut(s)	678
EcoICRI	GAGCTC	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	571
FaeI	CATG	1 cut(s)	524
FaiI	YATR	8 cut(s)	299, 312, 342, 470, 474, 482, 522, 738
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FatI	CATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	6 cut(s)	144, 230, 245, 306, 593, 727
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	6 cut(s)	144, 230, 245, 306, 593, 727
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	6 cut(s)	144, 230, 245, 306, 593, 727
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	251, 652
HapII	CCGG	3 cut(s)	11, 198, 248
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	524
HinfI	GANTC	6 cut(s)	14, 29, 112, 137, 328, 659
HpaII	CCGG	3 cut(s)	11, 198, 248
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	3 cut(s)	117, 136, 507
Hpy188III	TCNNGA	6 cut(s)	26, 260, 274, 332, 680, 720
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	32, 392
HpyCH4III	ACNGT	2 cut(s)	268, 428
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	6 cut(s)	143, 325, 447, 542, 646, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 302
HpyF3I	CTNAG	2 cut(s)	420, 678
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	524
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	117, 314, 625
LmnI	GCTCC	2 cut(s)	566, 574
LpnPI	CCDG	9 cut(s)	24, 211, 245, 261, 276, 300, 609, 665, 726
Lsp1109I	GCAGC	6 cut(s)	155, 216, 231, 292, 604, 713
LweI	GCATC	4 cut(s)	549, 551, 655, 713
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	3 cut(s)	119, 316, 627
MboI	GATC	3 cut(s)	117, 314, 625
MboII	GAAGA	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	5 cut(s)	73, 83, 499, 582, 750
MlyI	GAGTC	2 cut(s)	23, 23
MmeI	TCCRAC	1 cut(s)	733
MroNI	GCCGGC	1 cut(s)	247
MseI	TTAA	2 cut(s)	38, 354
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	3 cut(s)	11, 198, 248
Mva1269I	GAATGC	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	187, 302
NaeI	GCCGGC	1 cut(s)	249
NdeII	GATC	3 cut(s)	117, 314, 625
NgoMIV	GCCGGC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	524
PctI	GAATGC	1 cut(s)	449
PdiI	GCCGGC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	112, 137, 328, 659
PflFI	GACNNNGTC	1 cut(s)	428
PkrI	GCNGC	6 cut(s)	145, 231, 246, 307, 594, 728
PleI	GAGTC	2 cut(s)	22, 23
PpsI	GAGTC	2 cut(s)	22, 23
Psp124BI	GAGCTC	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	38, 354
SatI	GCNGC	6 cut(s)	144, 230, 245, 306, 593, 727
Sau3AI	GATC	3 cut(s)	117, 314, 625
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	2 cut(s)	23, 23
SduI	GDGCHC	1 cut(s)	571
SetI	ASST	8 cut(s)	167, 197, 259, 372, 403, 571, 715, 758
SfaNI	GCATC	4 cut(s)	549, 551, 655, 713
SfcI	CTRYAG	3 cut(s)	141, 297, 390
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	5 cut(s)	73, 83, 499, 582, 750
SspMI	CTAG	1 cut(s)	563
SstI	GAGCTC	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	268, 428
TaiI	ACGT	1 cut(s)	197
TasI	AATT	5 cut(s)	73, 83, 499, 582, 750
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	112, 137, 328, 659
Tru1I	TTAA	2 cut(s)	38, 354
Tru9I	TTAA	2 cut(s)	38, 354
TscAI	CASTG	3 cut(s)	164, 433, 445
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	6 cut(s)	143, 229, 244, 305, 592, 726
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	4 cut(s)	20, 224, 411, 512
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	3 cut(s)	164, 433, 445
Tth111I	GACNNNGTC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	83, 499
XceI	RCATGY	1 cut(s)	524
XspI	CTAG	1 cut(s)	563
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.