Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000982.1

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Reverse (-)

192044 .. 195928

Gene Structure 3885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000982.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgatgaagccggagtcgttccttcttgactccttgttaaatcgcctccacaacattgaaaaagcggtggaggtggactaccattgggccgagttcgctgacgttcggtaccccgttcaggtagtattgattggtgacgatgaaaaacccacacttgtgctgctttcggttttgctaccggccccacctccggaaactgctgcgtatggatcagtagtgcagattcttgacccacatagagatgggtttaatcttacattgaagctcaatctctctaaacttcctacagatgaaggttcaacgagttccttttctaagaaatgccacgctgcttctgctgcggttcatgcaacagtaagggctgtggttcatgcagtggtaaatgttgtggttcatacaagggttcatgttgcggtccatgtaaccgtaatttgtgtttcagttggccttcactaccaaagtggcgatgttgctgctcatgtcccaaatcccgttactgcaaaactagtttatgttcatgcagcagaaattgctgcattttaccatcatgttcgtgttcatgtcccgattgctcttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

193

Amino Acids

20.98

Weight (kDa)

6.55

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	3 cut(s)	65, 341, 413
AclWI	GGATC	1 cut(s)	217
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	118, 190
AgsI	TTSAA	3 cut(s)	59, 262, 300
AhlI	ACTAGT	1 cut(s)	505
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
AlwI	GGATC	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	3 cut(s)	87, 180, 445
ApeKI	GCWGC	7 cut(s)	160, 200, 329, 338, 473, 521, 533
Asp718I	GGTACC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	87, 181, 415
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	108
BbvI	GCAGC	7 cut(s)	147, 187, 316, 325, 460, 520, 533
BccI	CCATC	2 cut(s)	236, 552
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	7 cut(s)	161, 201, 330, 339, 474, 522, 534
BlsI	GCNGC	7 cut(s)	162, 202, 331, 340, 475, 523, 535
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	3 cut(s)	87, 181, 415
BmiI	GGNNCC	2 cut(s)	110, 183
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 190
Bse118I	RCCGGY	1 cut(s)	178
BseAI	TCCGGA	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	118, 190
BseXI	GCAGC	7 cut(s)	147, 187, 316, 325, 460, 520, 533
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	3 cut(s)	89, 182, 447
BshNI	GGYRCC	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	11, 179, 191
BslFI	GGGAC	2 cut(s)	467, 548
BslI	CCNNNNNNNGG	2 cut(s)	118, 190
BsmFI	GGGAC	2 cut(s)	467, 548
BsnI	GGCC	3 cut(s)	89, 182, 447
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	3 cut(s)	65, 341, 413
BspANI	GGCC	3 cut(s)	89, 182, 447
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	110, 183
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	355, 427
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstDEI	CTNAG	1 cut(s)	315
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 335, 338, 347, 530
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	7 cut(s)	147, 187, 316, 325, 460, 520, 533
BsuRI	GGCC	3 cut(s)	89, 182, 447
BtgZI	GCGATG	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	87, 181, 415
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	8 cut(s)	347, 371, 407, 419, 479, 518, 548, 560
CviJI	RGCY	6 cut(s)	10, 89, 182, 265, 362, 447
CviKI_1	RGCY	6 cut(s)	10, 89, 182, 265, 362, 447
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	415
FaeI	CATG	8 cut(s)	350, 374, 410, 422, 482, 521, 551, 563
FaqI	GGGAC	2 cut(s)	467, 548
FatI	CATG	8 cut(s)	346, 370, 406, 418, 478, 517, 547, 559
Fnu4HI	GCNGC	7 cut(s)	161, 201, 330, 339, 474, 522, 534
Fsp4HI	GCNGC	7 cut(s)	161, 201, 330, 339, 474, 522, 534
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	7 cut(s)	161, 201, 330, 339, 474, 522, 534
HaeIII	GGCC	3 cut(s)	89, 182, 447
HapII	CCGG	3 cut(s)	11, 179, 191
Hin1II	CATG	8 cut(s)	350, 374, 410, 422, 482, 521, 551, 563
HinfI	GANTC	3 cut(s)	14, 29, 223
HpaII	CCGG	3 cut(s)	11, 179, 191
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	4 cut(s)	26, 191, 227, 565
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	32, 287, 458
HpyCH4III	ACNGT	2 cut(s)	355, 427
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	6 cut(s)	220, 350, 374, 500, 521, 536
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 335, 338, 347, 530
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	8 cut(s)	350, 374, 410, 422, 482, 521, 551, 563
Kpn2I	TCCGGA	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	209
LpnPI	CCDG	4 cut(s)	24, 104, 192, 204
Lsp1109I	GCAGC	7 cut(s)	147, 187, 316, 325, 460, 520, 533
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	134, 421, 493
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MluCI	AATT	2 cut(s)	429, 528
MlyI	GAGTC	2 cut(s)	23, 23
MnlI	CCTC	3 cut(s)	56, 64, 198
MroI	TCCGGA	1 cut(s)	190
MseI	TTAA	2 cut(s)	38, 249
MslI	CAYNNNNRTG	3 cut(s)	155, 240, 552
MspI	CCGG	3 cut(s)	11, 179, 191
MwoI	GCNNNNNNNGC	5 cut(s)	95, 335, 338, 347, 530
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	8 cut(s)	350, 374, 410, 422, 482, 521, 551, 563
NlaIV	GGNNCC	2 cut(s)	110, 183
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	7 cut(s)	162, 202, 331, 340, 475, 523, 535
PleI	GAGTC	2 cut(s)	22, 23
PpsI	GAGTC	2 cut(s)	22, 23
PspN4I	GGNNCC	2 cut(s)	110, 183
PspPI	GGNCC	3 cut(s)	87, 181, 415
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	3 cut(s)	155, 240, 552
SaqAI	TTAA	2 cut(s)	38, 249
SatI	GCNGC	7 cut(s)	161, 201, 330, 339, 474, 522, 534
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	3 cut(s)	87, 181, 415
SchI	GAGTC	2 cut(s)	23, 23
SetI	ASST	6 cut(s)	75, 105, 123, 190, 267, 298
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	3 cut(s)	155, 240, 552
SpeI	ACTAGT	1 cut(s)	505
Sse9I	AATT	2 cut(s)	429, 528
SsiI	CCGC	3 cut(s)	65, 341, 413
SspMI	CTAG	1 cut(s)	506
TaaI	ACNGT	2 cut(s)	355, 427
TaiI	ACGT	1 cut(s)	105
TasI	AATT	2 cut(s)	429, 528
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	38, 249
Tru9I	TTAA	2 cut(s)	38, 249
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	7 cut(s)	160, 200, 329, 338, 473, 521, 533
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	9 cut(s)	20, 156, 306, 335, 359, 383, 395, 506, 548
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	415
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.