Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Forward (+)

27601403 .. 27601918

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGCCTAGCACTAATGAAAAATGTATTTGTTCTCTATTCTCGCGGTTTTTCTGTTGTGCAGCTGCAGCGCGCGTGAGATGTGAAAATGAGAATCGATTACCGGCTGAAGCCTTAGCCAGGAAGCCTCCTGATTCTGATTACCGGCACGTCCGATCGTATGGCAGGGTGGATTACCGGCTAAACCCAGTTAGGAATTTTGACTGGTATTCCAATGGGCCATTGACCATTGATGGTTTTGCAGGTGACGAGATGAAAAACCCACACATTGTGCTGCTTTCGTTTTCGCTGCCGGAAACTGTGTTCTTGAGTGGGCTTCGTGCTGGGGCTATAGAGGCTATAAAGGCTGCGTATGGATCAGTAGTGCAGATTCTTGACCCACATAGAGATAGCAGGTTTAATCTTACATTGAAGCTCAATCTCTACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

8.65

Isoelectric Point (pI)

27.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	2 cut(s)	233, 384
AccII	CGCG	3 cut(s)	46, 73, 75
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	412
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	119
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	65, 415
AluI	AGCT	2 cut(s)	65, 415
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	6 cut(s)	62, 65, 68, 274, 289, 347
ApoI	RAATTY	1 cut(s)	196
AspLEI	GCGC	2 cut(s)	73, 75
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	257
BbvI	GCAGC	6 cut(s)	52, 74, 80, 261, 276, 334
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	3 cut(s)	66, 330, 424
BfuAI	ACCTGC	2 cut(s)	233, 384
BisI	GCNGC	6 cut(s)	63, 66, 69, 275, 290, 348
BlsI	GCNGC	6 cut(s)	64, 67, 70, 276, 291, 349
Bme1390I	CCNGG	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	328
Bsa29I	ATCGAT	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse118I	RCCGGY	3 cut(s)	103, 144, 177
Bse1I	ACTGG	2 cut(s)	188, 209
BseBI	CCWGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	188, 209
BsePI	GCGCGC	1 cut(s)	71
BseXI	GCAGC	6 cut(s)	52, 74, 80, 261, 276, 334
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	2 cut(s)	81, 386
Bsh1236I	CGCG	3 cut(s)	46, 73, 75
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	4 cut(s)	104, 145, 178, 293
BslI	CCNNNNNNNGG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	155, 356
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	97
BspFNI	CGCG	3 cut(s)	46, 73, 75
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	2 cut(s)	233, 384
BspPI	GGATC	1 cut(s)	364
BsrFI	RCCGGY	3 cut(s)	103, 144, 177
BsrI	ACTGG	2 cut(s)	188, 209
BssAI	RCCGGY	3 cut(s)	103, 144, 177
BssHII	GCGCGC	1 cut(s)	71
BssMI	GATC	2 cut(s)	155, 356
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstFNI	CGCG	3 cut(s)	46, 73, 75
BstHHI	GCGC	2 cut(s)	73, 75
BstKTI	GATC	2 cut(s)	158, 359
BstMBI	GATC	2 cut(s)	155, 356
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 335, 344
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	3 cut(s)	66, 330, 424
BstUI	CGCG	3 cut(s)	46, 73, 75
BstV1I	GCAGC	6 cut(s)	52, 74, 80, 261, 276, 334
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	151
BveI	ACCTGC	2 cut(s)	233, 384
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	2 cut(s)	73, 75
Cfr10I	RCCGGY	3 cut(s)	103, 144, 177
Cfr13I	GGNCC	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	2 cut(s)	157, 358
DpnII	GATC	2 cut(s)	155, 356
DraIII	CACNNNGTG	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	119
FaiI	YATR	5 cut(s)	162, 332, 341, 354, 384
Fnu4HI	GCNGC	6 cut(s)	63, 66, 69, 275, 290, 348
Fsp4HI	GCNGC	6 cut(s)	63, 66, 69, 275, 290, 348
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	2 cut(s)	72, 74
GluI	GCNGC	6 cut(s)	63, 66, 69, 275, 290, 348
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	4 cut(s)	104, 145, 178, 293
HhaI	GCGC	2 cut(s)	73, 75
Hin6I	GCGC	2 cut(s)	71, 73
HinP1I	GCGC	2 cut(s)	71, 73
HinfI	GANTC	3 cut(s)	94, 134, 370
HpaII	CCGG	4 cut(s)	104, 145, 178, 293
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	139, 155
Hpy188III	TCNNGA	3 cut(s)	131, 307, 374
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	62, 68, 242, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 335, 344
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	150
HspAI	GCGC	2 cut(s)	71, 73
Kzo9I	GATC	2 cut(s)	155, 356
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	6 cut(s)	52, 74, 80, 261, 276, 334
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	157, 358
MboI	GATC	2 cut(s)	155, 356
MluCI	AATT	1 cut(s)	196
MnlI	CCTC	2 cut(s)	138, 328
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	4 cut(s)	104, 145, 178, 293
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	3 cut(s)	46, 73, 75
MwoI	GCNNNNNNNGC	3 cut(s)	68, 335, 344
NdeII	GATC	2 cut(s)	155, 356
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	245
PaqCI	CACCTGC	1 cut(s)	233
PauI	GCGCGC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	94, 134, 370
PkrI	GCNGC	6 cut(s)	64, 67, 70, 276, 291, 349
Ple19I	CGATCG	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	70
PteI	GCGCGC	1 cut(s)	71
PvuI	CGATCG	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	6 cut(s)	63, 66, 69, 275, 290, 348
Sau3AI	GATC	2 cut(s)	155, 356
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	5 cut(s)	67, 153, 247, 398, 417
SfcI	CTRYAG	3 cut(s)	66, 330, 424
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	97
TasI	AATT	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	94, 134, 370
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	6 cut(s)	62, 65, 68, 274, 289, 347
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	33, 269
XagI	CCTNNNNNAGG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	196
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.