Rw2G020470

Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
27937979 .. 27940591
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020470.1

Sequence Viewer

Length: 303 bp
ATGGTCTTCATTACAAGAATCAACTACGAGAGCTGCGGCTTCTCGTCCTTCAAATCAATTAAAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCACTGAGAGTAATTCTGAAGCAGCTTGCTTTGAGGACTTTTGCTTCCGATGTTGATCCACTTGTTGCTCTTGTGCATCGGCCGAAGGAATCCTTTTTCCTTATTCCTCAGGAGGAACTAAAATCTGTTGAACGCCTCCAACCTGCTTCCCAATGCGGCAAAGAGTATGTTAGTTTTTAA

Protein Analysis

100

Amino Acids

11.36

Weight (kDa)

9.26

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AciI CCGC 2 cut(s) 36, 279
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 2 cut(s) 52, 254
AluBI AGCT 3 cut(s) 33, 122, 148
AluI AGCT 3 cut(s) 33, 122, 148
Alw21I GWGCWC 1 cut(s) 124
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 33, 145
AxyI CCTNAGG 1 cut(s) 231
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 20, 157
BfaI CTAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 4 cut(s) 34, 37, 146, 280
BlsI GCNGC 4 cut(s) 35, 38, 147, 281
BmsI GCATC 2 cut(s) 104, 208
BsaBI GATNNNNATC 1 cut(s) 177
Bse21I CCTNAGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 177
BseMII CTCAG 2 cut(s) 119, 245
BseX3I CGGCCG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 20, 157
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 124
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 2 cut(s) 36, 279
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 2 cut(s) 120, 244
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 1 cut(s) 173
BssMI GATC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 128, 231
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMCI CGRYCG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 20, 157
BstZI CGGCCG 1 cut(s) 203
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 125
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 74
CviJI RGCY 5 cut(s) 33, 39, 122, 148, 205
CviKI_1 RGCY 5 cut(s) 33, 39, 122, 148, 205
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 128, 231
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 203
EagI CGGCCG 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 122
EclXI CGGCCG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 1 cut(s) 77
FaiI YATR 2 cut(s) 75, 291
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 4 cut(s) 34, 37, 146, 280
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 4 cut(s) 34, 37, 146, 280
FspBI CTAG 1 cut(s) 116
GluI GCNGC 4 cut(s) 34, 37, 146, 280
HaeIII GGCC 1 cut(s) 205
Hin1II CATG 1 cut(s) 77
HinfI GANTC 2 cut(s) 18, 212
Hpy188I TCNGA 2 cut(s) 141, 172
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 58, 202
HpyCH4V TGCA 2 cut(s) 95, 199
HpyF3I CTNAG 2 cut(s) 128, 231
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 119, 127
LpnPI CCDG 2 cut(s) 218, 279
Lsp1109I GCAGC 2 cut(s) 20, 157
LweI GCATC 2 cut(s) 104, 208
MaeI CTAG 1 cut(s) 116
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 2 cut(s) 57, 135
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 4 cut(s) 150, 229, 240, 269
MseI TTAA 2 cut(s) 60, 301
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 77
NspI RCATGY 1 cut(s) 77
PfeI GAWTC 2 cut(s) 18, 212
PkrI GCNGC 4 cut(s) 35, 38, 147, 281
Psp124BI GAGCTC 1 cut(s) 124
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 60, 301
SatI GCNGC 4 cut(s) 34, 37, 146, 280
Sau3AI GATC 1 cut(s) 178
SduI GDGCHC 1 cut(s) 124
SetI ASST 4 cut(s) 35, 124, 150, 268
SfaNI GCATC 2 cut(s) 104, 208
Sse9I AATT 2 cut(s) 57, 135
SsiI CCGC 2 cut(s) 36, 279
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 124
TasI AATT 2 cut(s) 57, 135
TatI WGTACW 1 cut(s) 66
TauI GCSGC 2 cut(s) 39, 282
TfiI GAWTC 2 cut(s) 18, 212
Tru1I TTAA 2 cut(s) 60, 301
Tru9I TTAA 2 cut(s) 60, 301
TscAI CASTG 1 cut(s) 132
TseI GCWGC 2 cut(s) 33, 145
TspRI CASTG 1 cut(s) 132
XceI RCATGY 1 cut(s) 77
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.