Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Reverse (-)

36361888 .. 36366085

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018797

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACGGAGCTGGGTGAGAGTGGTGGGGATCGACGTCGAAGTAACGACGCTAGGCTTGGAGCGAGAGTAGTGCAGATTCTTGACCCACATAGAGATGGGTTTAATCTTACATTGAAGCTCAATCTCTCTGAACTTCCTACAGATGAAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACTTTTGCTTCCGATGTTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGAAATGCCGTGCTGCTCCTGCTGCAGTTCATGCAACAGTTCAGGCTGTGGTTCATGCAGCGGTAAATGCTGTGGTTCATACAAGGGTTCATGATGCGGTCCATGTAACCGTAATTCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGATCCCGTTACTGCAAAACTAGTTCATGCAGCAGAAATTGCTGCATTTTACCATCATGTTCGTGTTCATGTCCCGATTGCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

192

Amino Acids

20.78

Weight (kDa)

9.2

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	37
AciI	CCGC	2 cut(s)	377, 413
AclWI	GGATC	3 cut(s)	36, 257, 482
AcoI	YGGCCR	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	505
AluBI	AGCT	3 cut(s)	10, 118, 206
AluI	AGCT	3 cut(s)	10, 118, 206
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	3 cut(s)	36, 257, 482
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	7 cut(s)	229, 329, 338, 374, 473, 515, 527
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	7 cut(s)	241, 316, 325, 386, 460, 514, 527
BccI	CCATC	2 cut(s)	89, 546
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	4 cut(s)	52, 86, 455, 489
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	3 cut(s)	51, 200, 506
BfmI	CTRYAG	2 cut(s)	138, 339
BisI	GCNGC	7 cut(s)	230, 330, 339, 375, 474, 516, 528
BlsI	GCNGC	7 cut(s)	231, 331, 340, 376, 475, 517, 529
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmsI	GCATC	3 cut(s)	188, 292, 400
BsaBI	GATNNNNATC	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse8I	GATNNNNATC	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	329
BseXI	GCAGC	7 cut(s)	241, 316, 325, 386, 460, 514, 527
BseYI	CCCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	467, 542
BsmFI	GGGAC	2 cut(s)	467, 542
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	28, 262, 487
BspACI	CCGC	2 cut(s)	377, 413
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	406
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	3 cut(s)	36, 257, 482
BssMI	GATC	3 cut(s)	28, 262, 487
BssNI	GRCGYC	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	355, 427
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	34
BstAPI	GCANNNNNTGC	2 cut(s)	347, 524
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	31, 265, 490
BstMBI	GATC	3 cut(s)	28, 262, 487
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 338, 347, 383, 524
BstNSI	RCATGY	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	138, 339
BstV1I	GCAGC	7 cut(s)	241, 316, 325, 386, 460, 514, 527
BsuRI	GGCC	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	9 cut(s)	158, 347, 371, 407, 419, 479, 512, 542, 554
CviJI	RGCY	7 cut(s)	10, 55, 118, 206, 232, 289, 362
CviKI_1	RGCY	7 cut(s)	10, 55, 118, 206, 232, 289, 362
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	30, 264, 489
DpnII	GATC	3 cut(s)	28, 262, 487
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	9 cut(s)	161, 350, 374, 410, 422, 482, 515, 545, 557
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	2 cut(s)	467, 542
FatI	CATG	9 cut(s)	157, 346, 370, 406, 418, 478, 511, 541, 553
Fnu4HI	GCNGC	7 cut(s)	230, 330, 339, 375, 474, 516, 528
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	7 cut(s)	230, 330, 339, 375, 474, 516, 528
FspBI	CTAG	3 cut(s)	51, 200, 506
GluI	GCNGC	7 cut(s)	230, 330, 339, 375, 474, 516, 528
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	9 cut(s)	161, 350, 374, 410, 422, 482, 515, 545, 557
HinfI	GANTC	2 cut(s)	76, 296
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	4 cut(s)	130, 225, 256, 318
Hpy188III	TCNNGA	3 cut(s)	80, 407, 559
Hpy99I	CGWCG	3 cut(s)	36, 39, 50
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	2 cut(s)	355, 427
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	9 cut(s)	73, 179, 283, 341, 350, 374, 500, 515, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 338, 347, 383, 524
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	9 cut(s)	161, 350, 374, 410, 422, 482, 515, 545, 557
Kzo9I	GATC	3 cut(s)	28, 262, 487
LmnI	GCTCC	5 cut(s)	7, 59, 203, 211, 337
LpnPI	CCDG	3 cut(s)	246, 344, 348
Lsp1109I	GCAGC	7 cut(s)	241, 316, 325, 386, 460, 514, 527
LweI	GCATC	3 cut(s)	188, 292, 400
MaeI	CTAG	3 cut(s)	51, 200, 506
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	3 cut(s)	41, 421, 493
MalI	GATC	3 cut(s)	30, 264, 489
MboI	GATC	3 cut(s)	28, 262, 487
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	3 cut(s)	219, 429, 522
MnlI	CCTC	2 cut(s)	234, 324
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	93, 546
MspA1I	CMGCKG	1 cut(s)	377
MwoI	GCNNNNNNNGC	5 cut(s)	335, 338, 347, 383, 524
NdeII	GATC	3 cut(s)	28, 262, 487
NlaIII	CATG	9 cut(s)	161, 350, 374, 410, 422, 482, 515, 545, 557
NspI	RCATGY	1 cut(s)	161
PagI	TCATGA	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	76, 296
PkrI	GCNGC	7 cut(s)	231, 331, 340, 376, 475, 517, 529
Psp124BI	GAGCTC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	2 cut(s)	93, 546
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	7 cut(s)	230, 330, 339, 375, 474, 516, 528
Sau3AI	GATC	3 cut(s)	28, 262, 487
Sau96I	GGNCC	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	4 cut(s)	12, 37, 120, 208
SfaNI	GCATC	3 cut(s)	188, 292, 400
SfcI	CTRYAG	2 cut(s)	138, 339
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	93, 546
SpeI	ACTAGT	1 cut(s)	505
Sse9I	AATT	3 cut(s)	219, 429, 522
SsiI	CCGC	2 cut(s)	377, 413
SspMI	CTAG	3 cut(s)	51, 200, 506
SstI	GAGCTC	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	355, 427
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	31, 37
TasI	AATT	3 cut(s)	219, 429, 522
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	76, 296
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	7 cut(s)	229, 329, 338, 374, 473, 515, 527
TspDTI	ATGAA	7 cut(s)	159, 335, 359, 383, 395, 500, 542
TspGWI	ACGGA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	415
XceI	RCATGY	1 cut(s)	161
XspI	CTAG	3 cut(s)	51, 200, 506
ZraI	GACGTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.