Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Forward (+)

29372050 .. 29374955

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAAAGCAGCATCGAAAAAGGAGTGGAGGTGGACTACGTTCAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACTTTTGCTTCCGATGTTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGAAATGTCGCGCAGCTCCTGCTGCGGTTCATGCAACAGTTCAGGCTGTGGTTCATGCAGCGGTAAATGCTGTGGTTACAAGGGTTCATGATGCAGTCCATGGAACCGTAATTCGTGTTTCAGTTGCCCTTCATTACCAAAGTGGCGATGTTGCTGCTTATGTCCCTGATCCCATTACTGCAAAACTAGTTCATGTTCATGCAGCAGAAAATTCTGCATTTTACCATCATGTTCGTGTTCATGTCCCGATTGCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

158

Amino Acids

17.16

Weight (kDa)

10.32

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	2 cut(s)	239, 275
AclWI	GGATC	2 cut(s)	155, 377
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	50
AhlI	ACTAGT	1 cut(s)	400
AluBI	AGCT	2 cut(s)	104, 230
AluI	AGCT	2 cut(s)	104, 230
Alw21I	GWGCWC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	155, 377
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	7 cut(s)	10, 127, 227, 236, 272, 368, 416
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
BccI	CCATC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	2 cut(s)	98, 401
BisI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
BlsI	GCNGC	7 cut(s)	12, 129, 229, 238, 274, 370, 418
BmiI	GGNNCC	1 cut(s)	319
BmsI	GCATC	4 cut(s)	22, 86, 190, 295
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	227
BseXI	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	362, 443
BsmFI	GGGAC	2 cut(s)	362, 443
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	160, 382
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	239, 275
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	155, 377
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	160, 382
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	253, 322
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	163, 385
BstMBI	GATC	2 cut(s)	160, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 236, 245, 281
BstNSI	RCATGY	1 cut(s)	59
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	9 cut(s)	56, 245, 269, 302, 314, 407, 413, 443, 455
CviJI	RGCY	5 cut(s)	104, 130, 187, 230, 260
CviKI_1	RGCY	5 cut(s)	104, 130, 187, 230, 260
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	162, 384
DpnII	GATC	2 cut(s)	160, 382
EaeI	YGGCCR	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	362, 443
FatI	CATG	9 cut(s)	55, 244, 268, 301, 313, 406, 412, 442, 454
Fnu4HI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
FspBI	CTAG	2 cut(s)	98, 401
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
HaeIII	GGCC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	4 cut(s)	46, 123, 154, 216
Hpy188III	TCNNGA	2 cut(s)	302, 460
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	2 cut(s)	253, 322
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	8 cut(s)	77, 181, 248, 272, 308, 395, 416, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 236, 245, 281
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	160, 382
LmnI	GCTCC	3 cut(s)	101, 109, 235
LpnPI	CCDG	4 cut(s)	144, 242, 246, 393
Lsp1109I	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
LweI	GCATC	4 cut(s)	22, 86, 190, 295
MaeI	CTAG	2 cut(s)	98, 401
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	162, 384
MboI	GATC	2 cut(s)	160, 382
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	3 cut(s)	117, 324, 424
MnlI	CCTC	3 cut(s)	23, 132, 222
MslI	CAYNNNNRTG	2 cut(s)	411, 447
MspA1I	CMGCKG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	233, 236, 245, 281
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	2 cut(s)	160, 382
NlaIII	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	7 cut(s)	12, 129, 229, 238, 274, 370, 418
Psp124BI	GAGCTC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	411, 447
SacI	GAGCTC	1 cut(s)	106
SatI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
Sau3AI	GATC	2 cut(s)	160, 382
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	4 cut(s)	34, 43, 106, 232
SfaNI	GCATC	4 cut(s)	22, 86, 190, 295
SmiMI	CAYNNNNRTG	2 cut(s)	411, 447
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	3 cut(s)	117, 324, 424
SsiI	CCGC	2 cut(s)	239, 275
SspMI	CTAG	2 cut(s)	98, 401
SstI	GAGCTC	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	253, 322
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	117, 324, 424
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	194
TseI	GCWGC	7 cut(s)	10, 127, 227, 236, 272, 368, 416
TspDTI	ATGAA	8 cut(s)	17, 233, 257, 290, 335, 395, 401, 443
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	2 cut(s)	98, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.