Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Forward (+)

30063515 .. 30066420

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG261100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAAAGCAGCATCGAAAAAGGAGTGGAGGTGGACTACGTTCAGAGTACAAACATGCTCTTTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACTTTTGCTTCCGATGTTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGAAATGTCGCGCAGCTCCTGCTGCGGTTCATGCAACAGTTCAGGCTGTGGTTCATGCAGCGGTAAATGCTGTGGTTACAAGGGTTCATGATGCAGTCCATGGAACCGTAATTCGTGTTTCAGTTGCCCTTCATTACCAAAGTGGCGATGTTGCTGCTTATGTCCCTGATCCCATTACTGCAAAACTAGTTCATGTTCATGCAGCAGAAAATTCTGCATTTTACCATCATGTTCGTGTTCATGTCCCGATTGCTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

158

Amino Acids

17.16

Weight (kDa)

10.32

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	2 cut(s)	239, 275
AclWI	GGATC	2 cut(s)	155, 377
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	50
AhlI	ACTAGT	1 cut(s)	400
AluBI	AGCT	2 cut(s)	104, 230
AluI	AGCT	2 cut(s)	104, 230
Alw21I	GWGCWC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	155, 377
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	7 cut(s)	10, 127, 227, 236, 272, 368, 416
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
BccI	CCATC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	2 cut(s)	98, 401
BisI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
BlsI	GCNGC	7 cut(s)	12, 129, 229, 238, 274, 370, 418
BmiI	GGNNCC	1 cut(s)	319
BmsI	GCATC	4 cut(s)	22, 86, 190, 295
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	227
BseXI	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	362, 443
BsmFI	GGGAC	2 cut(s)	362, 443
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	160, 382
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	239, 275
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	155, 377
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	160, 382
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	253, 322
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	163, 385
BstMBI	GATC	2 cut(s)	160, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 236, 245, 281
BstNSI	RCATGY	1 cut(s)	59
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	9 cut(s)	56, 245, 269, 302, 314, 407, 413, 443, 455
CviJI	RGCY	5 cut(s)	104, 130, 187, 230, 260
CviKI_1	RGCY	5 cut(s)	104, 130, 187, 230, 260
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	162, 384
DpnII	GATC	2 cut(s)	160, 382
EaeI	YGGCCR	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	362, 443
FatI	CATG	9 cut(s)	55, 244, 268, 301, 313, 406, 412, 442, 454
Fnu4HI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
FspBI	CTAG	2 cut(s)	98, 401
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
HaeIII	GGCC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	4 cut(s)	46, 123, 154, 216
Hpy188III	TCNNGA	2 cut(s)	302, 460
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	2 cut(s)	253, 322
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	8 cut(s)	77, 181, 248, 272, 308, 395, 416, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 236, 245, 281
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	160, 382
LmnI	GCTCC	3 cut(s)	101, 109, 235
LpnPI	CCDG	4 cut(s)	144, 242, 246, 393
Lsp1109I	GCAGC	7 cut(s)	22, 139, 223, 239, 284, 355, 428
LweI	GCATC	4 cut(s)	22, 86, 190, 295
MaeI	CTAG	2 cut(s)	98, 401
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	162, 384
MboI	GATC	2 cut(s)	160, 382
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	3 cut(s)	117, 324, 424
MnlI	CCTC	3 cut(s)	23, 132, 222
MslI	CAYNNNNRTG	2 cut(s)	411, 447
MspA1I	CMGCKG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	233, 236, 245, 281
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	2 cut(s)	160, 382
NlaIII	CATG	9 cut(s)	59, 248, 272, 305, 317, 410, 416, 446, 458
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	7 cut(s)	12, 129, 229, 238, 274, 370, 418
Psp124BI	GAGCTC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	411, 447
SacI	GAGCTC	1 cut(s)	106
SatI	GCNGC	7 cut(s)	11, 128, 228, 237, 273, 369, 417
Sau3AI	GATC	2 cut(s)	160, 382
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	4 cut(s)	34, 43, 106, 232
SfaNI	GCATC	4 cut(s)	22, 86, 190, 295
SmiMI	CAYNNNNRTG	2 cut(s)	411, 447
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	3 cut(s)	117, 324, 424
SsiI	CCGC	2 cut(s)	239, 275
SspMI	CTAG	2 cut(s)	98, 401
SstI	GAGCTC	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	253, 322
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	117, 324, 424
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	194
TseI	GCWGC	7 cut(s)	10, 127, 227, 236, 272, 368, 416
TspDTI	ATGAA	8 cut(s)	17, 233, 257, 290, 335, 395, 401, 443
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	2 cut(s)	98, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.