Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Forward (+)

14967310 .. 14969882

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATGAAGCCGGAGTCGTTCCTTCTTGACTCCTTGTTAAATCGCCTCCACAACATTGAAAAAGCGGTGGAGGTGGACTACCATTGGGCCGAGTTCGCTGACGTTCGGCACCCCGTTCAGGTAGTATTGATTGGTTTTCGTCAGAAACCCAGTGGCGATGAAAAACCCACACTTGTGCTGCCTTCGGTTTTGCTACCGGCCCCACCTCCGGAAACTGCTGCGTATGGATCAGTAGTGCAGATTCTTGACCCACATAGAGATGGGTTTAATCTTACATTGAAGCTCAATCTCTCTAAACTTCCTACAGATGAAGGTTCAACGAGTTCCTTTTCTAAGTGCATCGGCATAAAGAATCCTTTTTCCTTATTCCTCAGTGGACTATCAAGTTATAGGTTCCCAACGAGGACTGAAATGAGTGAGGAAAAGTCTATGCAGCCTATTTGCCAAAACTGTACTGTCATACCTCCTAATCTTCCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

160

Amino Acids

17.79

Weight (kDa)

6.07

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	235
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	118, 208
AgsI	TTSAA	3 cut(s)	59, 280, 318
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
AlwI	GGATC	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	2 cut(s)	87, 198
ApeKI	GCWGC	3 cut(s)	178, 218, 433
AspS9I	GGNCC	2 cut(s)	87, 199
BanI	GGYRCC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	165, 205, 445
BccI	CCATC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	179, 219, 434
BlsI	GCNGC	3 cut(s)	180, 220, 435
BmgT120I	GGNCC	2 cut(s)	87, 199
BmiI	GGNNCC	3 cut(s)	110, 201, 395
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 208
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	118, 208
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	165, 205, 445
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	89, 200
BshNI	GGYRCC	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	11, 197, 209
BslI	CCNNNNNNNGG	2 cut(s)	118, 208
BsnI	GGCC	2 cut(s)	89, 200
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	2 cut(s)	89, 200
BspCNI	CTCAG	1 cut(s)	384
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	110, 201, 395
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	452, 457
BstDEI	CTNAG	3 cut(s)	333, 371, 480
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	165, 205, 445
BsuRI	GGCC	2 cut(s)	89, 200
BtgZI	GCGATG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	157, 379
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	87, 199
Csp6I	GTAC	1 cut(s)	453
CviJI	RGCY	5 cut(s)	10, 89, 200, 283, 436
CviKI_1	RGCY	5 cut(s)	10, 89, 200, 283, 436
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	3 cut(s)	333, 371, 480
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
FaiI	YATR	6 cut(s)	225, 255, 347, 390, 431, 461
Fnu4HI	GCNGC	3 cut(s)	179, 219, 434
Fsp4HI	GCNGC	3 cut(s)	179, 219, 434
GluI	GCNGC	3 cut(s)	179, 219, 434
HaeIII	GGCC	2 cut(s)	89, 200
HapII	CCGG	3 cut(s)	11, 197, 209
HinfI	GANTC	4 cut(s)	14, 29, 241, 352
HpaII	CCGG	3 cut(s)	11, 197, 209
Hpy166II	GTNNAC	2 cut(s)	76, 377
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	26, 209, 245
Hpy8I	GTNNAC	2 cut(s)	76, 377
HpyAV	CCTTC	3 cut(s)	32, 192, 305
HpyCH4III	ACNGT	2 cut(s)	452, 457
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	238, 339, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	333, 371, 480
HpySE526I	ACGT	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	227
LpnPI	CCDG	5 cut(s)	24, 104, 163, 210, 222
Lsp1109I	GCAGC	3 cut(s)	165, 205, 445
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	1 cut(s)	102
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	464
MlyI	GAGTC	2 cut(s)	23, 23
MnlI	CCTC	7 cut(s)	56, 64, 216, 380, 396, 412, 474
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	2 cut(s)	38, 267
MslI	CAYNNNNRTG	2 cut(s)	173, 258
MspI	CCGG	3 cut(s)	11, 197, 209
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	227
NlaIV	GGNNCC	3 cut(s)	110, 201, 395
NmeAIII	GCCGAG	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	241, 352
PkrI	GCNGC	3 cut(s)	180, 220, 435
PleI	GAGTC	2 cut(s)	22, 23
PpsI	GAGTC	2 cut(s)	22, 23
PspN4I	GGNNCC	3 cut(s)	110, 201, 395
PspPI	GGNCC	2 cut(s)	87, 199
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	2 cut(s)	173, 258
SaqAI	TTAA	2 cut(s)	38, 267
SatI	GCNGC	3 cut(s)	179, 219, 434
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	87, 199
SchI	GAGTC	2 cut(s)	23, 23
SetI	ASST	8 cut(s)	75, 105, 123, 208, 285, 316, 395, 466
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	173, 258
SsiI	CCGC	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	452, 457
TaiI	ACGT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	241, 352
Tru1I	TTAA	2 cut(s)	38, 267
Tru9I	TTAA	2 cut(s)	38, 267
TscAI	CASTG	2 cut(s)	157, 379
TseI	GCWGC	3 cut(s)	178, 218, 433
TspDTI	ATGAA	3 cut(s)	20, 174, 324
TspRI	CASTG	2 cut(s)	157, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.