Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013750

Physical Location & Seq

Genomic Coordinates Forward (+)

29467848 .. 29477148

Gene Structure 9301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGATTGATCCAGAGCCTTCTATTGCATCTGTAAGGGAAGTGGTGCTAGGAGCTCCATTGAGAGTAATTCTGAAGCAGCCTGCTTTGAGGACTTTTGCTTGCGATGTTGATCCACTTGTTGCTCTTGTGCATCGGCCAAAGGAATCCTTTTTCCTTATTCCTCAGAAATGCCACGCTGCTCCTGCTGCGGTTCATGCAACAGTTCAGGCTGTGGTTCATGCAGCGGTAAATGCTGTGGTTACAAGGGTTCATGATGCGGTCCATGGAACCGTAATTCGTGTTTCAGTTGCCCTTCACTACCAAAGTGGCGATGTTGCTGCTCATGTCCCCGATCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

114

Amino Acids

12.14

Weight (kDa)

6.69

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328971 RchiOBHm_Chr2g0116291 RchiOBHm_Chr2g0116331 RchiOBHm_Chr6g0255481
rosa_laevigata	RLG00000018254 RLG00000018257 RLG00000018797 RLG00000023323
rosa_multiflora	Rmu_sc0000982.1_g000046
rosa_roxburghii	Rroxscaffold_2G00127340 Rroxscaffold_6G00393060
rosa_samantha	Rh2AG261100 Rh2BG272200 Rh2BG272500 Rh2DG269300 Rh7DG431500
rosa_wichuraiana	Rw1G007120 Rw2G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	191, 227, 260
AclWI	GGATC	3 cut(s)	5, 107, 329
AcoI	YGGCCR	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	5, 107, 329
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	5 cut(s)	79, 179, 188, 224, 320
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	5 cut(s)	91, 166, 175, 236, 307
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BfaI	CTAG	2 cut(s)	50, 343
BisI	GCNGC	5 cut(s)	80, 180, 189, 225, 321
BlsI	GCNGC	5 cut(s)	81, 181, 190, 226, 322
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	271
BmsI	GCATC	3 cut(s)	38, 142, 247
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	5 cut(s)	91, 166, 175, 236, 307
BshFI	GGCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	10, 112, 334
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	3 cut(s)	191, 227, 260
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	3 cut(s)	5, 107, 329
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	10, 112, 334
BssT1I	CCWWGG	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	205, 274
BstC8I	GCNNGC	2 cut(s)	84, 103
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	13, 115, 337
BstMBI	GATC	3 cut(s)	10, 112, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 188, 197, 233
BstV1I	GCAGC	5 cut(s)	91, 166, 175, 236, 307
BsuRI	GGCC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	265
BtgZI	GCGATG	2 cut(s)	120, 327
Cac8I	GCNNGC	2 cut(s)	84, 103
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	5 cut(s)	197, 221, 254, 266, 326
CviJI	RGCY	5 cut(s)	19, 56, 82, 139, 212
CviKI_1	RGCY	5 cut(s)	19, 56, 82, 139, 212
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	3 cut(s)	12, 114, 336
DpnII	GATC	3 cut(s)	10, 112, 334
EaeI	YGGCCR	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	5 cut(s)	200, 224, 257, 269, 329
FaiI	YATR	5 cut(s)	198, 222, 255, 267, 327
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	5 cut(s)	196, 220, 253, 265, 325
Fnu4HI	GCNGC	5 cut(s)	80, 180, 189, 225, 321
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	5 cut(s)	80, 180, 189, 225, 321
FspBI	CTAG	2 cut(s)	50, 343
GluI	GCNGC	5 cut(s)	80, 180, 189, 225, 321
HaeIII	GGCC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	200, 224, 257, 269, 329
HinfI	GANTC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	75, 168
Hpy188III	TCNNGA	2 cut(s)	14, 254
HpyAV	CCTTC	2 cut(s)	30, 305
HpyCH4III	ACNGT	2 cut(s)	205, 274
HpyCH4V	TGCA	4 cut(s)	29, 133, 200, 224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 188, 197, 233
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	200, 224, 257, 269, 329
Kzo9I	GATC	3 cut(s)	10, 112, 334
LmnI	GCTCC	3 cut(s)	53, 61, 187
LpnPI	CCDG	4 cut(s)	27, 96, 194, 198
Lsp1109I	GCAGC	5 cut(s)	91, 166, 175, 236, 307
LweI	GCATC	3 cut(s)	38, 142, 247
MaeI	CTAG	2 cut(s)	50, 343
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	12, 114, 336
MboI	GATC	3 cut(s)	10, 112, 334
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	69, 276
MnlI	CCTC	2 cut(s)	84, 174
MspA1I	CMGCKG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	185, 188, 197, 233
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	10, 112, 334
NlaIII	CATG	5 cut(s)	200, 224, 257, 269, 329
NlaIV	GGNNCC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	81, 181, 190, 226, 322
Psp124BI	GAGCTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	58
SatI	GCNGC	5 cut(s)	80, 180, 189, 225, 321
Sau3AI	GATC	3 cut(s)	10, 112, 334
Sau96I	GGNCC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	1 cut(s)	58
SfaNI	GCATC	3 cut(s)	38, 142, 247
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	2 cut(s)	69, 276
SsiI	CCGC	3 cut(s)	191, 227, 260
SspMI	CTAG	2 cut(s)	50, 343
SstI	GAGCTC	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	205, 274
TasI	AATT	2 cut(s)	69, 276
TfiI	GAWTC	1 cut(s)	146
TseI	GCWGC	5 cut(s)	79, 179, 188, 224, 320
TspDTI	ATGAA	3 cut(s)	185, 209, 242
VpaK11BI	GGWCC	1 cut(s)	262
XspI	CTAG	2 cut(s)	50, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.