Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008486

Physical Location & Seq

Genomic Coordinates Forward (+)

28628079 .. 28634137

Gene Structure 6059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGGGTTTCAGTCCTGCGGGCGGCGGCGGTGGCGGTGGCGGTGGTACGAGCAATGGTACCGGGAATAATAGCACCAGTAATAATAATAATAATAATAATAGTAATAATAGTAGCTGCTGTAACATGAGCCTCAAGTGTAGGTGTAAATGGAGGTGCCTGATGTCGTCGGGGTTCGTTTTCTTCTTCGGCTGTTTTGTGTTGTTCGGATCAGTCGCTACGATTTATGTGTGGTTTGCTTTCACGCCGTATTATTATGCTCGCGGCACAGCGGAGTCGTCGTCGTCGGCCGCCGTGCTTGGGTGTCAGGAGGACAATGAAGGTTCTTGGTCCGTTGGTGTTTTCTTCGGTGACTCTCCCTTTAATCTCAAGCCCATTGAAGCTGTGAATGTATGGAGAGACAAGAGTGCCGCCTGGCCTGTGGCAAACCCTGTTGTGACTTGTGCATCAGTTTCTGAATCTGGTTTCCCAAGTAATTTTGTTGCTGATCCTTTCCTTTATGTCCAGGGAGATACTTTGTACATGTTCTATGAAACCAAAAATTCAATCACCATGCAAGGAGATATTGGGGTTTCAAAAAGCTCTGATAAAGGAGCAACATGGCAGCAATTAGGCATTGCCTTGGATGAAGAGTGGCATCTCTCTTATCCATATGTCTTTCACTACCTTGGCCATATATATATGATGCCTGAAAGCAGCACGAATGGCGAAGTTCGTCTCTATCGAGCCCTCAGTTTTCCCATGCAATGGACTCTAGAAAAGGTGATCTTGAAAAAGCCTCTTGTCGACTCATTCCTTATCAATTATGATGGAGCCTATTGGCTTTTCGGTTCAGACCACAGTGGATTTGGCACCACAAAGAATGGACAGTTGGAAATCTGGTACAGTAGCTCGCCTTTGGGTCCTTGGAAACCACACAAGAAGAACCCTATATATAATGGTGACAAGAGCTTTGGGGCTCGAAATGGAGGCAGACCATTTTTTTACAACGGGAATCTCTATCGCTTTGGTCAAGACTGTGCTGAAACGTATGGGAGACGTGTGCGCACCTTTAAGGTGGAAGTTCTTACCAAAGATGAATATAAGGAAGTTGAAGTCCCGTTGGGCCTTCCTGAGCCAAATAAGGGTCGCAATGCTTGGAATGGTGTTCGCTTCCATCATCTCGATGTGCAACAACTAAATACTGGAGGGTGGATTGCAGTAATGGATGGAGACCGTGTACCTTCTGGAGATTCTGTACACAGGTTTATTGTTGGTAGTGCTTCAGTTGCCATTGTCGCTATACTTGTTATATTACTAGGTGTACTACTTGGAGCTGTGAAGTGCATGATTCCCCCCAATTGGTGCACTCACAACTCGGGTAAGAGAAGTGATGCATTCATGGCTTGTGAAAGGTCATATCTGTGTTCGTCCAAACTGAGACGTTTTTGCAGCCGCTTGAACAGAGCAGTTTCATCCCTCAGAGGTAGGATTAAGCCTAATACCTGTGCTGGAAGACTAGTTCTTGCTATATATTTGGCATTTGGAGTGGCAGCTATGTGCACAGGGGTTAAATATATCTATGGCGGCAGTGGTGCAGAAGAAGCTTACCCATTAAAAGGTCATTACTCACAGTTCACGTTATTAACAATGACTTATGATGCTCGTCTCTGGAATTTGAAAATGTATGTTAAACACTATTCTAGATGTTCATCGGTAAGAGAAATTGTTGTGGTGTGGAACAAGGGTATACCTCCTGAAGCGAGTGATTTTGACTCTGCAGTGCCAGTTAGGATCAGAGTAGAGAAACAGAACTCCCTGAATAACCGGTTCAAGTTGGATTCTTTGATAAAGACTCGAGCTGTTCTGGAGCTTGATGACGACATTATGATGACCTGCAATGATATTGAGAGAGGATTCAGGATATGGCGTCAACACCCGGATCGTATTGTGGGTTTCTACCCCCGGCTCATTGATGGAAGTCCATTGAAGTACAGAGGTGAGAAACATGCTCGGAGTCATAGAGGCTATAATATGATTCTCACTGGGGCAGCATTCCTTGATAGCCAAGTAGCTTTTAAGAGGTATTGGAGTGAAGAAGCTAGCCCAGGGAGGGACTTTGTGGACAAGTCTTTCAATTGTGAGGACGTGCTTATGAATTACCTGTATGCAAATGCTAGCTCATCTCAGAATGTAGAGTATGTGAGGCCAGCATGGGCGATAGATACGTCGAAGTTATCTGGTGCTGCTATTAGCCGAAATACCCAAGTTCACTACAACAAGAGGAGCAACTGCCTGGTGAAATTTTCTGAGATGTATGGAACTTTGGCTGGGCGCAAGTGGGAATTTGATGGGCGGAAGGATGGGTGGGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

784

Amino Acids

87.74

Weight (kDa)

8.96

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GINT1_N	PF24793	101 - 404	1.3e-178	Glucosamine inositolphosphorylceramide transferase 1, N-terminal
Glyco_transf_64	PF09258	538 - 773	2.1e-63	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04500
fragaria_vesca	FvH4_7g07030 FvH4_7g07030
malus_domestica	MD02G1240800.v1.1 MD02G1240900.v1.1 MD07G1076200.v1.1
prunus_persica	Prupe.2G096900_v2.0.a1
pyrus_communis	pycom02g20590 pycom07g06000
rosa_chinensis	RchiOBHm_Chr1g0336981 RchiOBHm_Chr1g0359101 RchiOBHm_Chr4g0385241
rosa_laevigata	RLG00000029317
rosa_multiflora	Rmu_sc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026440
rosa_rugosa	Rorug01G0129300
rosa_samantha	Rh1AG150300 Rh1BG118500 Rh1CG141600 Rh1DG157400 Rh1DG185700
rosa_wichuraiana	Rw1G012140 Rw1G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	1880
Acc65I	GGTACC	1 cut(s)	56
AccB1I	GGYRCC	3 cut(s)	56, 153, 848
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccI	GTMKAC	2 cut(s)	783, 1726
AccII	CGCG	1 cut(s)	261
AclWI	GGATC	4 cut(s)	214, 479, 1778, 1926
AcoI	YGGCCR	2 cut(s)	285, 667
AcsI	RAATTY	4 cut(s)	538, 1651, 2279, 2321
AcuI	CTGAAG	2 cut(s)	1245, 1755
AcyI	GRCGYC	1 cut(s)	1906
AfaI	GTAC	8 cut(s)	46, 58, 518, 881, 1218, 1236, 1302, 1970
AfiI	CCNNNNNNNGG	7 cut(s)	20, 297, 744, 1121, 1338, 1595, 2089
AflIII	ACRYGT	2 cut(s)	519, 1036
AgeI	ACCGGT	1 cut(s)	1803
AhlI	ACTAGT	1 cut(s)	1495
AjiI	CACGTC	2 cut(s)	1037, 2125
AjnI	CCWGG	4 cut(s)	410, 501, 2083, 2271
AjuI	GAANNNNNNNTTGG	2 cut(s)	851, 883
AloI	GAACNNNNNNTCC	2 cut(s)	1482, 1514
Alw21I	GWGCWC	2 cut(s)	1346, 1541
Alw26I	GTCTC	6 cut(s)	390, 719, 1027, 1203, 1411, 1649
Alw44I	GTGCAC	2 cut(s)	1342, 1537
AlwI	GGATC	4 cut(s)	214, 479, 1778, 1926
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	2 cut(s)	1354, 1833
AoxI	GGCC	5 cut(s)	285, 413, 667, 1102, 2183
ApaLI	GTGCAC	2 cut(s)	1342, 1537
ApeKI	GCWGC	7 cut(s)	114, 601, 693, 1428, 1529, 2027, 2222
ApoI	RAATTY	4 cut(s)	538, 1651, 2279, 2321
ArsI	GACNNNNNNTTYG	2 cut(s)	932, 964
AsiGI	ACCGGT	1 cut(s)	1803
Asp718I	GGTACC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	1044, 2313
AspS9I	GGNCC	3 cut(s)	327, 899, 1102
AsuC2I	CCSGG	3 cut(s)	61, 1916, 1942
AsuHPI	GGTGA	6 cut(s)	359, 538, 772, 950, 1988, 2287
AsuNHI	GCTAGC	2 cut(s)	2078, 2153
AvaI	CYCGRG	2 cut(s)	1354, 1833
AvaII	GGWCC	2 cut(s)	327, 899
BaeGI	GKGCMC	2 cut(s)	1346, 1541
BalI	TGGCCA	1 cut(s)	669
BanI	GGYRCC	3 cut(s)	56, 153, 848
BanII	GRGCYC	2 cut(s)	727, 958
BbsI	GAAGAC	1 cut(s)	1498
Bbv12I	GWGCWC	2 cut(s)	1346, 1541
BbvI	GCAGC	7 cut(s)	101, 613, 705, 1440, 1541, 2039, 2209
BccI	CCATC	6 cut(s)	800, 1161, 1199, 1946, 2321, 2333
BceAI	ACGGC	2 cut(s)	229, 275
BciT130I	CCWGG	4 cut(s)	412, 503, 2085, 2273
BcnI	CCSGG	3 cut(s)	61, 1916, 1942
BcoDI	GTCTC	6 cut(s)	390, 719, 1027, 1203, 1411, 1649
BcuI	ACTAGT	1 cut(s)	1495
BfaI	CTAG	6 cut(s)	752, 1295, 1496, 1680, 2079, 2154
BfmI	CTRYAG	1 cut(s)	1755
BfuAI	ACCTGC	1 cut(s)	1880
Bme1390I	CCNGG	7 cut(s)	61, 412, 503, 1916, 1942, 2085, 2273
Bme18I	GGWCC	2 cut(s)	327, 899
BmeT110I	CYCGRG	2 cut(s)	1354, 1833
BmgBI	CACGTC	2 cut(s)	1037, 2125
BmgT120I	GGNCC	3 cut(s)	327, 899, 1102
BmiI	GGNNCC	5 cut(s)	58, 155, 811, 850, 900
BmrFI	CCNGG	7 cut(s)	61, 412, 503, 1916, 1942, 2085, 2273
BmrI	ACTGGG	1 cut(s)	2031
BmsI	GCATC	5 cut(s)	452, 643, 672, 1360, 1627
BmtI	GCTAGC	2 cut(s)	2082, 2157
BmuI	ACTGGG	1 cut(s)	2031
BpiI	GAAGAC	1 cut(s)	1498
BpmI	CTGGAG	3 cut(s)	1203, 1245, 1865
Bpu10I	CCTNAGC	1 cut(s)	1110
BpuEI	CTTGAG	2 cut(s)	116, 350
BpuMI	CCSGG	3 cut(s)	61, 1916, 1942
BsaBI	GATNNNNATC	1 cut(s)	1687
BsaHI	GRCGYC	1 cut(s)	1906
BsaI	GGTCTC	1 cut(s)	1203
BsaJI	CCNNGG	7 cut(s)	502, 618, 664, 902, 1940, 2083, 2084
BsaWI	WCCGGW	1 cut(s)	1803
BsaXI	ACNNNNNCTCC	6 cut(s)	263, 293, 1200, 1218, 1230, 1248
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 297, 744, 1121, 1338, 1595, 2089
Bse118I	RCCGGY	1 cut(s)	1803
Bse1I	ACTGG	4 cut(s)	75, 1186, 1763, 2026
Bse3DI	GCAATG	5 cut(s)	58, 612, 749, 1135, 1882
Bse8I	GATNNNNATC	1 cut(s)	1687
BseBI	CCWGG	4 cut(s)	412, 503, 2085, 2273
BseDI	CCNNGG	7 cut(s)	502, 618, 664, 902, 1940, 2083, 2084
BseGI	GGATG	5 cut(s)	628, 1210, 1451, 2344, 2353
BseJI	GATNNNNATC	1 cut(s)	1687
BseLI	CCNNNNNNNGG	7 cut(s)	20, 297, 744, 1121, 1338, 1595, 2089
BseMI	GCAATG	5 cut(s)	58, 612, 749, 1135, 1882
BseMII	CTCAG	6 cut(s)	742, 1101, 1406, 1471, 2177, 2277
BseNI	ACTGG	4 cut(s)	75, 1186, 1763, 2026
BseRI	GAGGAG	1 cut(s)	2275
BseSI	GKGCMC	2 cut(s)	1346, 1541
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	7 cut(s)	101, 613, 705, 1440, 1541, 2039, 2209
BseYI	CCCAGC	1 cut(s)	2306
BsgI	GTGCAG	1 cut(s)	1593
Bsh1236I	CGCG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	287, 415, 669, 1104, 2185
BshNI	GGYRCC	3 cut(s)	56, 153, 848
BshTI	ACCGGT	1 cut(s)	1803
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	1346, 1541
BsiHKCI	CYCGRG	2 cut(s)	1354, 1833
BsiSI	CCGG	4 cut(s)	60, 1804, 1916, 1942
BslFI	GGGAC	2 cut(s)	1079, 2105
BslI	CCNNNNNNNGG	7 cut(s)	20, 297, 744, 1121, 1338, 1595, 2089
BsmAI	GTCTC	6 cut(s)	390, 719, 1027, 1203, 1411, 1649
BsmBI	CGTCTC	4 cut(s)	719, 1027, 1411, 1649
BsmFI	GGGAC	2 cut(s)	1079, 2105
BsmI	GAATGC	2 cut(s)	1373, 2030
BsnI	GGCC	5 cut(s)	287, 415, 669, 1104, 2185
Bso31I	GGTCTC	1 cut(s)	1203
BsoBI	CYCGRG	2 cut(s)	1354, 1833
Bsp1286I	GDGCHC	4 cut(s)	727, 958, 1346, 1541
Bsp1407I	TGTACA	2 cut(s)	516, 1234
Bsp143I	GATC	5 cut(s)	206, 484, 762, 1770, 1918
BspANI	GGCC	5 cut(s)	287, 415, 669, 1104, 2185
BspCNI	CTCAG	6 cut(s)	741, 1102, 1407, 1470, 2176, 2278
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	5 cut(s)	58, 155, 811, 850, 900
BspMAI	CTGCAG	1 cut(s)	1759
BspMI	ACCTGC	1 cut(s)	1880
BspOI	GCTAGC	2 cut(s)	2082, 2157
BspPI	GGATC	4 cut(s)	214, 479, 1778, 1926
BspT107I	GGYRCC	3 cut(s)	56, 153, 848
BspTNI	GGTCTC	1 cut(s)	1203
BsrDI	GCAATG	5 cut(s)	58, 612, 749, 1135, 1882
BsrFI	RCCGGY	1 cut(s)	1803
BsrGI	TGTACA	2 cut(s)	516, 1234
BsrI	ACTGG	4 cut(s)	75, 1186, 1763, 2026
BssAI	RCCGGY	1 cut(s)	1803
BssECI	CCNNGG	7 cut(s)	502, 618, 664, 902, 1940, 2083, 2084
BssMI	GATC	5 cut(s)	206, 484, 762, 1770, 1918
BssNAI	GTATAC	1 cut(s)	1727
BssNI	GRCGYC	1 cut(s)	1906
BssT1I	CCWWGG	3 cut(s)	618, 664, 902
Bst1107I	GTATAC	1 cut(s)	1727
Bst2UI	CCWGG	4 cut(s)	412, 503, 2085, 2273
Bst4CI	ACNGT	6 cut(s)	839, 867, 884, 1016, 1214, 1611
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	1906
BstAUI	TGTACA	2 cut(s)	516, 1234
BstC8I	GCNNGC	6 cut(s)	19, 259, 890, 2080, 2155, 2187
BstDEI	CTNAG	6 cut(s)	728, 1110, 1415, 1457, 2163, 2286
BstF5I	GGATG	5 cut(s)	628, 1210, 1451, 2344, 2353
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	1044, 2313
BstKTI	GATC	5 cut(s)	209, 487, 765, 1773, 1921
BstMAI	GTCTC	6 cut(s)	390, 719, 1027, 1203, 1411, 1649
BstMBI	GATC	5 cut(s)	206, 484, 762, 1770, 1918
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 702, 1265, 1274, 1379, 1580
BstNI	CCWGG	4 cut(s)	412, 503, 2085, 2273
BstNSI	RCATGY	2 cut(s)	523, 1988
BstSCI	CCNGG	7 cut(s)	59, 410, 501, 1914, 1940, 2083, 2271
BstSFI	CTRYAG	1 cut(s)	1755
BstSLI	GKGCMC	2 cut(s)	1346, 1541
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	7 cut(s)	101, 613, 705, 1440, 1541, 2039, 2209
BstV2I	GAAGAC	1 cut(s)	1498
BstZ17I	GTATAC	1 cut(s)	1727
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	287, 415, 669, 1104, 2185
BtrI	CACGTC	2 cut(s)	1037, 2125
BtsCI	GGATG	5 cut(s)	628, 1210, 1451, 2344, 2353
BtsI	GCAGTG	2 cut(s)	1573, 1764
BtsIMutI	CAGTG	4 cut(s)	844, 1573, 1764, 2019
BveI	ACCTGC	1 cut(s)	1880
Cac8I	GCNNGC	6 cut(s)	19, 259, 890, 2080, 2155, 2187
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	2 cut(s)	1044, 2313
Cfr10I	RCCGGY	1 cut(s)	1803
Cfr13I	GGNCC	3 cut(s)	327, 899, 1102
CseI	GACGC	1 cut(s)	1895
Csp6I	GTAC	8 cut(s)	45, 57, 517, 880, 1217, 1235, 1301, 1969
CspAI	ACCGGT	1 cut(s)	1803
CviAII	CATG	9 cut(s)	124, 520, 550, 597, 739, 1324, 1378, 1985, 2190
CviQI	GTAC	8 cut(s)	45, 57, 517, 880, 1217, 1235, 1301, 1969
DdeI	CTNAG	6 cut(s)	728, 1110, 1415, 1457, 2163, 2286
DpnI	GATC	5 cut(s)	208, 486, 764, 1772, 1920
DpnII	GATC	5 cut(s)	206, 484, 762, 1770, 1918
EaeI	YGGCCR	2 cut(s)	285, 667
EagI	CGGCCG	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	2347
EclXI	CGGCCG	1 cut(s)	285
Eco130I	CCWWGG	3 cut(s)	618, 664, 902
Eco24I	GRGCYC	2 cut(s)	727, 958
Eco31I	GGTCTC	1 cut(s)	1203
Eco47I	GGWCC	2 cut(s)	327, 899
Eco52I	CGGCCG	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	1245, 1755
Eco88I	CYCGRG	2 cut(s)	1354, 1833
EcoO109I	RGGNCCY	1 cut(s)	899
EcoRII	CCWGG	4 cut(s)	410, 501, 2083, 2271
EcoT14I	CCWWGG	3 cut(s)	618, 664, 902
EcoT22I	ATGCAT	1 cut(s)	1375
EcoT38I	GRGCYC	2 cut(s)	727, 958
ErhI	CCWWGG	3 cut(s)	618, 664, 902
Esp3I	CGTCTC	4 cut(s)	719, 1027, 1411, 1649
FaeI	CATG	9 cut(s)	127, 523, 553, 600, 742, 1327, 1381, 1988, 2193
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FaqI	GGGAC	2 cut(s)	1079, 2105
FatI	CATG	9 cut(s)	123, 519, 549, 596, 738, 1323, 1377, 1984, 2189
FauI	CCCGC	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	649
FblI	GTMKAC	2 cut(s)	783, 1726
FokI	GGATG	4 cut(s)	635, 1217, 1438, 2351
FriOI	GRGCYC	2 cut(s)	727, 958
FspAI	RTGCGCAY	1 cut(s)	1043
FspBI	CTAG	6 cut(s)	752, 1295, 1496, 1680, 2079, 2154
FspI	TGCGCA	1 cut(s)	1043
GlaI	GCGC	2 cut(s)	1043, 2312
GsaI	CCCAGC	1 cut(s)	2310
GsuI	CTGGAG	3 cut(s)	1203, 1245, 1865
HaeIII	GGCC	5 cut(s)	287, 415, 669, 1104, 2185
HapII	CCGG	4 cut(s)	60, 1804, 1916, 1942
HgaI	GACGC	1 cut(s)	1895
HhaI	GCGC	2 cut(s)	1044, 2313
Hin1I	GRCGYC	1 cut(s)	1906
Hin1II	CATG	9 cut(s)	127, 523, 553, 600, 742, 1327, 1381, 1988, 2193
Hin6I	GCGC	2 cut(s)	1042, 2311
HinP1I	GCGC	2 cut(s)	1042, 2311
HincII	GTYRAC	2 cut(s)	784, 1910
HindII	GTYRAC	2 cut(s)	784, 1910
HindIII	AAGCTT	1 cut(s)	1581
HpaII	CCGG	4 cut(s)	60, 1804, 1916, 1942
HphI	GGTGA	6 cut(s)	359, 538, 772, 950, 1988, 2287
Hpy188I	TCNGA	9 cut(s)	206, 454, 583, 832, 1460, 1775, 1992, 2166, 2287
Hpy99I	CGWCG	5 cut(s)	169, 280, 283, 286, 2209
HpyAV	CCTTC	4 cut(s)	311, 1115, 1230, 2329
HpyCH4III	ACNGT	6 cut(s)	839, 867, 884, 1016, 1214, 1611
HpyCH4IV	ACGT	6 cut(s)	1025, 1036, 1420, 1616, 2124, 2204
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 702, 1265, 1274, 1379, 1580
HpyF3I	CTNAG	6 cut(s)	728, 1110, 1415, 1457, 2163, 2286
HpySE526I	ACGT	6 cut(s)	1025, 1036, 1420, 1616, 2124, 2204
Hsp92I	GRCGYC	1 cut(s)	1906
Hsp92II	CATG	9 cut(s)	127, 523, 553, 600, 742, 1327, 1381, 1988, 2193
HspAI	GCGC	2 cut(s)	1042, 2311
KpnI	GGTACC	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	206, 484, 762, 1770, 1918
LmnI	GCTCC	5 cut(s)	590, 809, 1310, 1846, 2262
Lsp1109I	GCAGC	7 cut(s)	101, 613, 705, 1440, 1541, 2039, 2209
LweI	GCATC	5 cut(s)	452, 643, 672, 1360, 1627
MaeI	CTAG	6 cut(s)	752, 1295, 1496, 1680, 2079, 2154
MaeII	ACGT	6 cut(s)	1025, 1036, 1420, 1616, 2124, 2204
MaeIII	GTNAC	4 cut(s)	119, 347, 433, 938
MalI	GATC	5 cut(s)	208, 486, 764, 1772, 1920
MboI	GATC	5 cut(s)	206, 484, 762, 1770, 1918
MboII	GAAGA	8 cut(s)	172, 175, 334, 638, 931, 1503, 1589, 2084
MfeI	CAATTG	2 cut(s)	1336, 2113
MhlI	GDGCHC	4 cut(s)	727, 958, 1346, 1541
MlsI	TGGCCA	1 cut(s)	669
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	7 cut(s)	281, 344, 742, 779, 1745, 1825, 2002
MmeI	TCCRAC	2 cut(s)	849, 1794
Mox20I	TGGCCA	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	1375
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	8 cut(s)	360, 1050, 1470, 1548, 1592, 1622, 1668, 2055
MslI	CAYNNNNRTG	3 cut(s)	1161, 1399, 1865
Msp20I	TGGCCA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	4 cut(s)	60, 1804, 1916, 1942
MspR9I	CCNGG	7 cut(s)	61, 412, 503, 1916, 1942, 2085, 2273
MunI	CAATTG	2 cut(s)	1336, 2113
Mva1269I	GAATGC	2 cut(s)	1373, 2030
MvaI	CCWGG	4 cut(s)	412, 503, 2085, 2273
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	6 cut(s)	30, 702, 1265, 1274, 1379, 1580
NciI	CCSGG	3 cut(s)	61, 1916, 1942
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	5 cut(s)	206, 484, 762, 1770, 1918
NheI	GCTAGC	2 cut(s)	2078, 2153
NlaIII	CATG	9 cut(s)	127, 523, 553, 600, 742, 1327, 1381, 1988, 2193
NlaIV	GGNNCC	5 cut(s)	58, 155, 811, 850, 900
NmuCI	GTSAC	3 cut(s)	347, 433, 938
NsbI	TGCGCA	1 cut(s)	1043
NsiI	ATGCAT	1 cut(s)	1375
NspI	RCATGY	2 cut(s)	523, 1988
PaeR7I	CTCGAG	1 cut(s)	1833
PasI	CCCWGGG	1 cut(s)	2084
PciI	ACATGT	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PctI	GAATGC	2 cut(s)	1373, 2030
PfeI	GAWTC	7 cut(s)	455, 991, 1229, 1327, 1817, 1893, 2014
PflMI	CCANNNNNTGG	1 cut(s)	744
PinAI	ACCGGT	1 cut(s)	1803
PleI	GAGTC	7 cut(s)	280, 344, 742, 779, 1745, 1825, 2001
PpsI	GAGTC	7 cut(s)	280, 344, 742, 779, 1745, 1825, 2001
PpuMI	RGGWCCY	1 cut(s)	899
PscI	ACATGT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	899
Psp6I	CCWGG	4 cut(s)	410, 501, 2083, 2271
PspFI	CCCAGC	1 cut(s)	2306
PspGI	CCWGG	4 cut(s)	410, 501, 2083, 2271
PspN4I	GGNNCC	5 cut(s)	58, 155, 811, 850, 900
PspPI	GGNCC	3 cut(s)	327, 899, 1102
PspPPI	RGGWCCY	1 cut(s)	899
PspXI	VCTCGAGB	1 cut(s)	1833
PstI	CTGCAG	1 cut(s)	1759
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	8 cut(s)	46, 58, 518, 881, 1218, 1236, 1302, 1970
RsaNI	GTAC	8 cut(s)	45, 57, 517, 880, 1217, 1235, 1301, 1969
RseI	CAYNNNNRTG	3 cut(s)	1161, 1399, 1865
SalI	GTCGAC	1 cut(s)	782
SaqAI	TTAA	8 cut(s)	360, 1050, 1470, 1548, 1592, 1622, 1668, 2055
Sau3AI	GATC	5 cut(s)	206, 484, 762, 1770, 1918
Sau96I	GGNCC	3 cut(s)	327, 899, 1102
SchI	GAGTC	7 cut(s)	281, 344, 742, 779, 1745, 1825, 2002
ScrFI	CCNGG	7 cut(s)	61, 412, 503, 1916, 1942, 2085, 2273
SduI	GDGCHC	4 cut(s)	727, 958, 1346, 1541
SfaNI	GCATC	5 cut(s)	452, 643, 672, 1360, 1627
SfcI	CTRYAG	1 cut(s)	1755
Sfr274I	CTCGAG	1 cut(s)	1833
SinI	GGWCC	2 cut(s)	327, 899
SlaI	CTCGAG	1 cut(s)	1833
SmiMI	CAYNNNNRTG	3 cut(s)	1161, 1399, 1865
SmlI	CTYRAG	3 cut(s)	131, 365, 1833
SmoI	CTYRAG	3 cut(s)	131, 365, 1833
SpeI	ACTAGT	1 cut(s)	1495
SspMI	CTAG	6 cut(s)	752, 1295, 1496, 1680, 2079, 2154
StyD4I	CCNGG	7 cut(s)	59, 410, 501, 1914, 1940, 2083, 2271
StyI	CCWWGG	3 cut(s)	618, 664, 902
TaaI	ACNGT	6 cut(s)	839, 867, 884, 1016, 1214, 1611
TaiI	ACGT	6 cut(s)	1028, 1039, 1423, 1619, 2127, 2207
TaqI	TCGA	6 cut(s)	721, 783, 958, 1161, 1834, 2207
TatI	WGTACW	4 cut(s)	516, 1234, 1300, 1968
TauI	GCSGC	7 cut(s)	24, 27, 264, 290, 410, 1434, 1566
TfiI	GAWTC	7 cut(s)	455, 991, 1229, 1327, 1817, 1893, 2014
Tru1I	TTAA	8 cut(s)	360, 1050, 1470, 1548, 1592, 1622, 1668, 2055
Tru9I	TTAA	8 cut(s)	360, 1050, 1470, 1548, 1592, 1622, 1668, 2055
TscAI	CASTG	4 cut(s)	844, 1573, 1764, 2026
TseFI	GTSAC	3 cut(s)	347, 433, 938
TseI	GCWGC	7 cut(s)	114, 601, 693, 1428, 1529, 2027, 2222
Tsp45I	GTSAC	3 cut(s)	347, 433, 938
TspDTI	ATGAA	8 cut(s)	330, 543, 639, 1089, 1366, 1440, 1677, 2147
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	4 cut(s)	844, 1573, 1764, 2026
Van91I	CCANNNNNTGG	1 cut(s)	744
VneI	GTGCAC	2 cut(s)	1342, 1537
VpaK11BI	GGWCC	2 cut(s)	327, 899
XapI	RAATTY	4 cut(s)	538, 1651, 2279, 2321
XbaI	TCTAGA	2 cut(s)	751, 1679
XceI	RCATGY	2 cut(s)	523, 1988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XhoI	CTCGAG	1 cut(s)	1833
XmiI	GTMKAC	2 cut(s)	783, 1726
XspI	CTAG	6 cut(s)	752, 1295, 1496, 1680, 2079, 2154
Zsp2I	ATGCAT	1 cut(s)	1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.