Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008486

Physical Location & Seq

Genomic Coordinates Reverse (-)

51107597 .. 51108646

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTACAGGTTTGGCCGATTGTTGATCGTGGAAAAAGAATCAAAGTCCGAAAGCTTAAGGTTTTCCAGCGAAGCTTCTGCAGTTTCCGGCGATCGTCGGGGTTGCATGAGACATTTTCCGGCAACTCTGGTGGATCAGTGGCTACGATTTATGTGTGGTTTGCTTTCACGCCGTATTATTATGCTCGAAGCATGGCGGAGTCATCATCGTCGGCCACCATGCTTGGGTGTCAAGAGGACAATGAAGGTTCTTGGTCTATTGGTGTTTTCTTCGATGACTCTCCCTTTAATCTCAAGCCCATTGAAGCTGGGTTTGGTGTTTTGACTGATAGTGGGTTTGGTGTGATGAATGTATGGAGAGACAAGAGTGCCGCCTGGCCTGTGGCAAACCCTGTTGTGACTTGTGCTTCAGTTTCTGAATCTGGTTTCCCAAGTAATTTTGTTGCTGATCCTTTCCTTTATGTCCAGGTAATTGCTCTGGTTTGTGCTGAAATTTATTGGTTGTTGCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

171

Amino Acids

19.02

Weight (kDa)

6.56

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GINT1_N	PF24793	77 - 158	6.8e-32	Glucosamine inositolphosphorylceramide transferase 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04500
fragaria_vesca	FvH4_7g07030 FvH4_7g07030
malus_domestica	MD02G1240800.v1.1 MD02G1240900.v1.1 MD07G1076200.v1.1
prunus_persica	Prupe.2G096900_v2.0.a1
pyrus_communis	pycom02g20590 pycom07g06000
rosa_chinensis	RchiOBHm_Chr1g0336981 RchiOBHm_Chr1g0359101 RchiOBHm_Chr4g0385241
rosa_laevigata	RLG00000029317
rosa_multiflora	Rmu_sc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026440
rosa_rugosa	Rorug01G0129300
rosa_samantha	Rh1AG150300 Rh1BG118500 Rh1CG141600 Rh1DG157400 Rh1DG185700
rosa_wichuraiana	Rw1G012140 Rw1G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	197, 372
AclWI	GGATC	2 cut(s)	142, 443
AcoI	YGGCCR	2 cut(s)	14, 213
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	374, 465
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	3 cut(s)	55, 75, 308
AluI	AGCT	3 cut(s)	55, 75, 308
Alw26I	GTCTC	2 cut(s)	104, 354
AlwI	GGATC	2 cut(s)	142, 443
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	3 cut(s)	14, 213, 377
ApoI	RAATTY	1 cut(s)	492
BceAI	ACGGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	2 cut(s)	376, 467
BcoDI	GTCTC	2 cut(s)	104, 354
BfmI	CTRYAG	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	376, 467
BmrFI	CCNGG	2 cut(s)	376, 467
BpuEI	CTTGAG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	376, 467
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	16, 215, 379
BsiEI	CGRYCG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	88, 120
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	104, 354
BsnI	GGCC	3 cut(s)	16, 215, 379
Bsp143I	GATC	4 cut(s)	25, 92, 134, 448
BspACI	CCGC	2 cut(s)	197, 372
BspANI	GGCC	3 cut(s)	16, 215, 379
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	2 cut(s)	142, 443
BspTI	CTTAAG	1 cut(s)	56
BssMI	GATC	4 cut(s)	25, 92, 134, 448
Bst2UI	CCWGG	2 cut(s)	376, 467
BstAFI	CTTAAG	1 cut(s)	56
BstKTI	GATC	4 cut(s)	28, 95, 137, 451
BstMAI	GTCTC	2 cut(s)	104, 354
BstMBI	GATC	4 cut(s)	25, 92, 134, 448
BstMCI	CGRYCG	1 cut(s)	95
BstNI	CCWGG	2 cut(s)	376, 467
BstSCI	CCNGG	2 cut(s)	374, 465
BstSFI	CTRYAG	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	16, 215, 379
BtsIMutI	CAGTG	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	5
CspCI	CAANNNNNGTGG	4 cut(s)	112, 147, 205, 240
CviAII	CATG	3 cut(s)	107, 193, 220
CviJI	RGCY	8 cut(s)	16, 55, 75, 143, 215, 298, 308, 379
CviKI_1	RGCY	8 cut(s)	16, 55, 75, 143, 215, 298, 308, 379
CviQI	GTAC	1 cut(s)	5
DpnI	GATC	4 cut(s)	27, 94, 136, 450
DpnII	GATC	4 cut(s)	25, 92, 134, 448
EaeI	YGGCCR	2 cut(s)	14, 213
EciI	GGCGGA	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	374, 465
FaeI	CATG	3 cut(s)	110, 196, 223
FaiI	YATR	7 cut(s)	108, 153, 183, 194, 221, 355, 462
FatI	CATG	3 cut(s)	106, 192, 219
Fnu4HI	GCNGC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
GsaI	CCCAGC	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	16, 215, 379
HapII	CCGG	2 cut(s)	88, 120
Hin1II	CATG	3 cut(s)	110, 196, 223
HindIII	AAGCTT	2 cut(s)	53, 73
HinfI	GANTC	4 cut(s)	39, 200, 278, 419
HpaII	CCGG	2 cut(s)	88, 120
Hpy188I	TCNGA	3 cut(s)	50, 418, 515
Hpy188III	TCNNGA	1 cut(s)	233
Hpy99I	CGWCG	2 cut(s)	100, 214
HpyAV	CCTTC	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	81, 106, 508
Hsp92II	CATG	3 cut(s)	110, 196, 223
Kzo9I	GATC	4 cut(s)	25, 92, 134, 448
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	4 cut(s)	27, 94, 136, 450
MboI	GATC	4 cut(s)	25, 92, 134, 448
MboII	GAAGA	1 cut(s)	262
MluCI	AATT	4 cut(s)	436, 471, 492, 509
MlyI	GAGTC	2 cut(s)	209, 272
MnlI	CCTC	1 cut(s)	229
MseI	TTAA	2 cut(s)	57, 288
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	2 cut(s)	88, 120
MspR9I	CCNGG	2 cut(s)	376, 467
MvaI	CCWGG	2 cut(s)	376, 467
NdeII	GATC	4 cut(s)	25, 92, 134, 448
NlaIII	CATG	3 cut(s)	110, 196, 223
NmuCI	GTSAC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	39, 419
PkrI	GCNGC	1 cut(s)	373
Ple19I	CGATCG	1 cut(s)	95
PleI	GAGTC	2 cut(s)	208, 272
PpsI	GAGTC	2 cut(s)	208, 272
Psp6I	CCWGG	2 cut(s)	374, 465
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	2 cut(s)	374, 465
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	416
PvuI	CGATCG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	57, 288
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	25, 92, 134, 448
SchI	GAGTC	2 cut(s)	209, 272
ScrFI	CCNGG	2 cut(s)	376, 467
SetI	ASST	7 cut(s)	12, 57, 63, 77, 250, 310, 471
SfcI	CTRYAG	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	56, 293
SmoI	CTYRAG	2 cut(s)	56, 293
Sse9I	AATT	4 cut(s)	436, 471, 492, 509
SsiI	CCGC	2 cut(s)	197, 372
StyD4I	CCNGG	2 cut(s)	374, 465
TaqI	TCGA	2 cut(s)	187, 273
TasI	AATT	4 cut(s)	436, 471, 492, 509
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	2 cut(s)	39, 419
Tru1I	TTAA	2 cut(s)	57, 288
Tru9I	TTAA	2 cut(s)	57, 288
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	258, 362
TspRI	CASTG	1 cut(s)	144
Vha464I	CTTAAG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.