Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008486

Physical Location & Seq

Genomic Coordinates Reverse (-)

21986016 .. 21986189

Gene Structure 174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0129300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGATGACATTTCAGTCTTCTCACATATTCGGTGAAGGGAATAAAGTTGCAGATGCTTTAGCAAAGTATGGTTCATCTTCTTTTGAAATGGTGTGGTGGGATTCACCTCCTTCATTTATCCTTTTGCACTATAAGAATGATCGTCGGGGTCTTCCTCAATTTCGTTTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

57

Amino Acids

6.69

Weight (kDa)

9.4

Isoelectric Point (pI)

75.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04500
fragaria_vesca	FvH4_7g07030 FvH4_7g07030
malus_domestica	MD02G1240800.v1.1 MD02G1240900.v1.1 MD07G1076200.v1.1
prunus_persica	Prupe.2G096900_v2.0.a1
pyrus_communis	pycom02g20590 pycom07g06000
rosa_chinensis	RchiOBHm_Chr1g0336981 RchiOBHm_Chr1g0359101 RchiOBHm_Chr4g0385241
rosa_laevigata	RLG00000029317
rosa_multiflora	Rmu_sc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026440
rosa_rugosa	Rorug01G0129300
rosa_samantha	Rh1AG150300 Rh1BG118500 Rh1CG141600 Rh1DG157400 Rh1DG185700
rosa_wichuraiana	Rw1G012140 Rw1G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	44, 96
BbsI	GAAGAC	2 cut(s)	9, 143
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	9, 143
Bsp143I	GATC	1 cut(s)	139
BssMI	GATC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	9, 143
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
FaiI	YATR	3 cut(s)	26, 69, 132
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	2 cut(s)	44, 96
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	29, 120
HpyCH4V	TGCA	2 cut(s)	50, 127
Kzo9I	GATC	1 cut(s)	139
LweI	GCATC	1 cut(s)	43
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	9, 69, 143
MluCI	AATT	1 cut(s)	158
MnlI	CCTC	2 cut(s)	117, 165
MseI	TTAA	1 cut(s)	172
NdeII	GATC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	172
Sau3AI	GATC	1 cut(s)	139
SetI	ASST	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	43
SgeI	CNNG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	158
TasI	AATT	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	172
Tru9I	TTAA	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	63, 102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.