Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008486

Physical Location & Seq

Genomic Coordinates Forward (+)

33343649 .. 33344861

Gene Structure 1213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTGAAGCATGGCGAGTCGTCGTCGTCGGGCCGCCATGCTTGGGTGTCGGGGAGGACAATGAAGGTTCTTGGTCTGTTGGTGTTTTCTTCGATGACACTCCCTTTAATCTCAAGCCCATTGAAGCTATGAATGTATGGAGAGACAAGAGTGCCGCCTGGCTTGTGGCAAACCCTATTGTGACTTGTGCTTCAGTTTTTGAATCTGGTTTCCCAAGTAATTTTGTTGCTGATCCTTTCCTTTATGTCCAGAATTGGGAATTGGAATTAAGAGAGGTGGCAATTTCCCCAACCATGCACCGCCGTGAAATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

105

Amino Acids

11.76

Weight (kDa)

4.45

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GINT1_N	PF24793	19 - 88	2e-33	Glucosamine inositolphosphorylceramide transferase 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04500
fragaria_vesca	FvH4_7g07030 FvH4_7g07030
malus_domestica	MD02G1240800.v1.1 MD02G1240900.v1.1 MD07G1076200.v1.1
prunus_persica	Prupe.2G096900_v2.0.a1
pyrus_communis	pycom02g20590 pycom07g06000
rosa_chinensis	RchiOBHm_Chr1g0336981 RchiOBHm_Chr1g0359101 RchiOBHm_Chr4g0385241
rosa_laevigata	RLG00000029317
rosa_multiflora	Rmu_sc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026440
rosa_rugosa	Rorug01G0129300
rosa_samantha	Rh1AG150300 Rh1BG118500 Rh1CG141600 Rh1DG157400 Rh1DG185700
rosa_wichuraiana	Rw1G012140 Rw1G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	35, 156, 301
AclWI	GGATC	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	44, 256
AgsI	TTSAA	3 cut(s)	8, 125, 203
AjnI	CCWGG	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	35, 156
BlsI	GCNGC	2 cut(s)	36, 157
Bme1390I	CCNGG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 256
BseBI	CCWGG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	44, 256
BshFI	GGCC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	44, 256
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	3 cut(s)	35, 156, 301
BspANI	GGCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	227
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	160
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	32
CviAII	CATG	3 cut(s)	12, 39, 295
CviJI	RGCY	4 cut(s)	34, 118, 128, 163
CviKI_1	RGCY	4 cut(s)	34, 118, 128, 163
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	3 cut(s)	15, 42, 298
FaiI	YATR	7 cut(s)	13, 40, 131, 139, 246, 296, 316
FatI	CATG	3 cut(s)	11, 38, 294
Fnu4HI	GCNGC	2 cut(s)	35, 156
Fsp4HI	GCNGC	2 cut(s)	35, 156
GluI	GCNGC	2 cut(s)	35, 156
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	15, 42, 298
HinfI	GANTC	2 cut(s)	18, 203
Hpy188III	TCNNGA	1 cut(s)	250
Hpy99I	CGWCG	3 cut(s)	26, 29, 32
HpyAV	CCTTC	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	298, 314
Hsp92II	CATG	3 cut(s)	15, 42, 298
Kzo9I	GATC	1 cut(s)	232
LpnPI	CCDG	4 cut(s)	145, 172, 192, 263
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	6 cut(s)	220, 253, 260, 266, 282, 309
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	49, 268
MseI	TTAA	2 cut(s)	108, 269
MslI	CAYNNNNRTG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	15, 42, 298
NmuCI	GTSAC	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	36, 157
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	108, 269
SatI	GCNGC	2 cut(s)	35, 156
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	3 cut(s)	70, 130, 279
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	6 cut(s)	220, 253, 260, 266, 282, 309
SsiI	CCGC	3 cut(s)	35, 156, 301
StyD4I	CCNGG	1 cut(s)	158
TaqI	TCGA	1 cut(s)	93
TasI	AATT	6 cut(s)	220, 253, 260, 266, 282, 309
TauI	GCSGC	2 cut(s)	37, 158
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	108, 269
Tru9I	TTAA	2 cut(s)	108, 269
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	78, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.