Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008486

Physical Location & Seq

Genomic Coordinates Forward (+)

37377952 .. 37403305

Gene Structure 25354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGGTCGATGATGGTATACACCATCGATCGGTTCTTTAACTTGTCTTTCCTGGAGGCTGATGAAGCTTCGACGCCGGCTCCGATTGCTGGAGTTTCGGGTCAGCCACACCCACCTTTCGGGTCGGTTGCAAATCTGCTTGGGTCTAAAGGTTGTTCAATCATGGATGTGTTTCTTGATGCCCAAATGATTGGGTTCAACCAGAATACGACGCTGATGGTTTTCACTGCCGACAAAGACTACTCAAGGAACAGCTCCGATTACTCGATGATTTTCTGGGAGCACGTCATCATTAAGCGAGTCGGATTTTCATCAAAATCTATTGGATCAGTGGTTTTCACAGTGGCTACGATTTATGTGTGGTTTGCTTTCACGTCGTATTATTATGCTCGGAGCACGGCGGAGTCGTCGTCGTCGGCCGCCGTGCTTGGGTGTCAGGAGGACAATGAAGGTTCTTGGTCTGTTGATGTTTTCTTCGATGACTCTCCCTTTAATCTCAAGCCCATTGAAGCTATGAATGTATGGAGAGACAAGAGTGCTGCCTGGCCTGTGGCAAACCCTGTTGTGACTTGTGCTTCAGTTTTTGAATCTGGTTTCCCAAGTAATTTTGTTGTTGATCCTTTCCTTTATGTCCAGAACGTAAAAGAAGATTTTACTGTAGCAAGTAACGTGATCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

226

Amino Acids

24.92

Weight (kDa)

4.41

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GINT1_N	PF24793	145 - 213	6.8e-34	Glucosamine inositolphosphorylceramide transferase 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04500
fragaria_vesca	FvH4_7g07030 FvH4_7g07030
malus_domestica	MD02G1240800.v1.1 MD02G1240900.v1.1 MD07G1076200.v1.1
prunus_persica	Prupe.2G096900_v2.0.a1
pyrus_communis	pycom02g20590 pycom07g06000
rosa_chinensis	RchiOBHm_Chr1g0336981 RchiOBHm_Chr1g0359101 RchiOBHm_Chr4g0385241
rosa_laevigata	RLG00000029317
rosa_multiflora	Rmu_sc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026440
rosa_rugosa	Rorug01G0129300
rosa_samantha	Rh1AG150300 Rh1BG118500 Rh1CG141600 Rh1DG157400 Rh1DG185700
rosa_wichuraiana	Rw1G012140 Rw1G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	401, 420
AclWI	GGATC	2 cut(s)	334, 611
AcoI	YGGCCR	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	4 cut(s)	30, 89, 119, 429
AgsI	TTSAA	4 cut(s)	159, 199, 509, 587
AjiI	CACGTC	2 cut(s)	286, 375
AjnI	CCWGG	2 cut(s)	51, 542
AluBI	AGCT	3 cut(s)	68, 255, 512
AluI	AGCT	3 cut(s)	68, 255, 512
Alw21I	GWGCWC	2 cut(s)	285, 398
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	2 cut(s)	334, 611
AoxI	GGCC	2 cut(s)	417, 545
ApeKI	GCWGC	1 cut(s)	539
Bbv12I	GWGCWC	2 cut(s)	285, 398
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	3 cut(s)	7, 32, 211
BceAI	ACGGC	2 cut(s)	407, 414
BciT130I	CCWGG	2 cut(s)	53, 544
BcoDI	GTCTC	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	657
BisI	GCNGC	2 cut(s)	420, 540
BlsI	GCNGC	2 cut(s)	421, 541
Bme1390I	CCNGG	2 cut(s)	53, 544
BmgBI	CACGTC	2 cut(s)	286, 375
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	53, 544
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	74, 111
BpuEI	CTTGAG	2 cut(s)	229, 482
Bsa29I	ATCGAT	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	74
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 89, 119, 429
Bse118I	RCCGGY	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	53, 544
BseCI	ATCGAT	1 cut(s)	27
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	30, 89, 119, 429
BseX3I	CGGCCG	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	526
Bsh1285I	CGRYCG	2 cut(s)	31, 420
BshFI	GGCC	2 cut(s)	419, 547
BshVI	ATCGAT	1 cut(s)	27
BsiEI	CGRYCG	2 cut(s)	31, 420
BsiHKAI	GWGCWC	2 cut(s)	285, 398
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	4 cut(s)	30, 89, 119, 429
BsmAI	GTCTC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	419, 547
Bsp1286I	GDGCHC	2 cut(s)	285, 398
Bsp143I	GATC	4 cut(s)	28, 326, 616, 672
BspACI	CCGC	2 cut(s)	401, 420
BspANI	GGCC	2 cut(s)	419, 547
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	334, 611
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	4 cut(s)	28, 326, 616, 672
BssNAI	GTATAC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	74
Bst1107I	GTATAC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	53, 544
Bst4CI	ACNGT	2 cut(s)	343, 658
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	4 cut(s)	31, 329, 619, 675
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	4 cut(s)	28, 326, 616, 672
BstMCI	CGRYCG	2 cut(s)	31, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 86
BstNI	CCWGG	2 cut(s)	53, 544
BstSCI	CCNGG	2 cut(s)	51, 542
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstZ17I	GTATAC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	417
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	419, 547
BsuTUI	ATCGAT	1 cut(s)	27
BtrI	CACGTC	2 cut(s)	286, 375
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	225, 336, 348
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	2 cut(s)	82, 220
CviAII	CATG	1 cut(s)	163
DpnI	GATC	4 cut(s)	30, 328, 618, 674
DpnII	GATC	4 cut(s)	28, 326, 616, 672
EaeI	YGGCCR	1 cut(s)	417
EagI	CGGCCG	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	416
EclXI	CGGCCG	1 cut(s)	417
Eco52I	CGGCCG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	51, 542
FaeI	CATG	1 cut(s)	166
FaiI	YATR	7 cut(s)	19, 164, 357, 387, 515, 523, 630
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	420, 540
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	420, 540
GluI	GCNGC	2 cut(s)	420, 540
GsuI	CTGGAG	2 cut(s)	74, 111
HaeIII	GGCC	2 cut(s)	419, 547
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	2 cut(s)	82, 220
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	4 cut(s)	300, 404, 482, 587
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	84, 259, 305, 393
Hpy188III	TCNNGA	3 cut(s)	176, 437, 634
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	6 cut(s)	76, 214, 379, 412, 415, 418
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	2 cut(s)	343, 658
HpyCH4IV	ACGT	4 cut(s)	285, 374, 639, 669
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 86
HpySE526I	ACGT	4 cut(s)	285, 374, 639, 669
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	4 cut(s)	28, 326, 616, 672
LmnI	GCTCC	4 cut(s)	85, 260, 280, 393
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	4 cut(s)	285, 374, 639, 669
MaeIII	GTNAC	2 cut(s)	565, 665
MalI	GATC	4 cut(s)	30, 328, 618, 674
MboI	GATC	4 cut(s)	28, 326, 616, 672
MboII	GAAGA	2 cut(s)	466, 659
MhlI	GDGCHC	2 cut(s)	285, 398
MluCI	AATT	1 cut(s)	604
MlyI	GAGTC	3 cut(s)	309, 413, 476
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	2 cut(s)	49, 433
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	3 cut(s)	39, 294, 492
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	53, 544
MvaI	CCWGG	2 cut(s)	53, 544
MwoI	GCNNNNNNNGC	2 cut(s)	65, 86
NaeI	GCCGGC	1 cut(s)	78
NdeII	GATC	4 cut(s)	28, 326, 616, 672
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 404
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	587
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	421, 541
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	3 cut(s)	308, 412, 476
PpsI	GAGTC	3 cut(s)	308, 412, 476
Psp6I	CCWGG	2 cut(s)	51, 542
PspGI	CCWGG	2 cut(s)	51, 542
PspN4I	GGNNCC	1 cut(s)	81
PvuI	CGATCG	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	39, 294, 492
SatI	GCNGC	2 cut(s)	420, 540
Sau3AI	GATC	4 cut(s)	28, 326, 616, 672
SchI	GAGTC	3 cut(s)	309, 413, 476
ScrFI	CCNGG	2 cut(s)	53, 544
SduI	GDGCHC	2 cut(s)	285, 398
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	244, 497
SmoI	CTYRAG	2 cut(s)	244, 497
Sse9I	AATT	1 cut(s)	604
SsiI	CCGC	2 cut(s)	401, 420
StyD4I	CCNGG	2 cut(s)	51, 542
TaaI	ACNGT	2 cut(s)	343, 658
TaiI	ACGT	4 cut(s)	288, 377, 642, 672
TaqI	TCGA	5 cut(s)	8, 27, 71, 266, 477
TasI	AATT	1 cut(s)	604
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	3 cut(s)	39, 294, 492
Tru9I	TTAA	3 cut(s)	39, 294, 492
TscAI	CASTG	3 cut(s)	232, 336, 348
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	4 cut(s)	78, 300, 462, 530
TspRI	CASTG	3 cut(s)	232, 336, 348
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.