Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000115.1

Orthogroup ID

OG0008486

Physical Location & Seq

Genomic Coordinates Forward (+)

5591 .. 11090

Gene Structure 5500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

atgggtttcagtcctgccgccggcggcggtggcgggggtacgagcaatggtaccgggaataatagcaccagtaatattaaaaataataatagtagctgctgtaacatgagcctcaagtgtaggtgtaaatggaggtgcctgatgtcgtcggggttcgttttcttcttcggctgtttggtgttgttcggatcagtcgctacgatttatgtgtggtttgctttcacgccgtattattacgctcgcagcacggccgagtcgtcgtcgtcggccgccgtgcttgggtgtcaggaggacaatgaaggttcttggtccgttggtgttttcttcggtgactctccctttaatctcaagcccattgaagctgtgaatgtatggagagacaagagtgccgcctggcctgtggcaaaccctgttgtgacttgtgcatcagtttctgaatctggtttcccaagtaattttgttgctgatcctttcctttatgtccagggagatactttgtacatgttctatgaaaccaaaaattcaatcactatgcaaggagatattggggtttcaaaaagctctgataaaggagcaacatggcagcaattaggcattgccttggatgaagagtggcatctctcttatccatatgtctttcactaccttggccatatatatatgatgcctgaaagcagcacgaatggcgaagttcgtctctatcgagccctcagttttcccatgcaatggactctagaaaaggtgatcttgaaaaagcctcttgtagactcattccttatcaattatgatggagcctattggcttttcggttcagaccacagtggatttggcaccacaaagaatggacagttggaaatctggtacagtagctcgcctttgggtccttggaaaccacacaagaagaaccctatatataatggtgacaagagctttggggctcgaaatggaggcagaccatttttttacaacgggaatctctatcgctttggtcaagactgtgctgaaacgtatgggagacgtgtgcgcacctttaaggtggaagttcttaccaaagatgaatataaggaagttgaagtcccgttgggccttcctgagccaaataagggtcgcaatgcttggaatggtgttcgcttccatcatctcgatgtgcaacaactaaatactggagggtggattgcagtaatggatggagaccgtgtaccttctggagattctgtacacaggtttattgttggtagtgcttcagttgccattgtcgctgtacttgttatattactaggtgtactacttggagctgtgaagtgcatgattccccccaattggtgcactcacaactcgggtaagagaagtgatgcattcatggcttgtggaaggtcatatctgtgttcgtccaaactgagacgtttttggagccgcttgaacagagcagtttcattcctcagaggtaggattaagcctaatacctgtgctggaagactagttcttgctatatatttggcatttggagtggcagctatgtgcacaggggttaaatatatatatggcggcagtggtgcagaagaagcttacccattaaaaggtcattactcacagttcacgttattaacaatgacttatgatgctcgtctctggaatttgaaaatgtatgttaaacactattctagatgttcatcggtaagagaaattgttgtggtgtggaacaagggtatacctcctgaagcgagtgattttgactctgcagtgccagttaggatcagagtagagaaacagaactccctgaataaccggttcaagttggattctttgataaagactcgagctgttctggagcttgatgacgacattatgatgacctgcaatgatattgagagaggattcaggatatggcgtcaacacccggatcgtattgtgggtttctacccccggctcattgatggaagtccattgaagtacagaggtgagaaacatgctcggagtcatagaggctataatatgattctcactggggcagctttccttgatagccaagtagcttttaagaggtattggagtgaagaagctagcccagggagggactttgtggacaagtctttcaattgcgaggatgtgctcatgaattacctgtatgcaaatgctagctcatctcagaatgtagagtatgtgaggccagcatgggcgatagatacgtcgaagttatctggtgctgctattagccgaaatacccaagttcactacaacaagaggagcaactgcctggtgaaattttctgaaatgtatggaactttggctgggcgcaagtgggaatttgatgggcggaaggatgggtgggatgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

778

Amino Acids

87.28

Weight (kDa)

9.05

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04500
fragaria_vesca	FvH4_7g07030 FvH4_7g07030
malus_domestica	MD02G1240800.v1.1 MD02G1240900.v1.1 MD07G1076200.v1.1
prunus_persica	Prupe.2G096900_v2.0.a1
pyrus_communis	pycom02g20590 pycom07g06000
rosa_chinensis	RchiOBHm_Chr1g0336981 RchiOBHm_Chr1g0359101 RchiOBHm_Chr4g0385241
rosa_laevigata	RLG00000029317
rosa_multiflora	Rmu_sc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026440
rosa_rugosa	Rorug01G0129300
rosa_samantha	Rh1AG150300 Rh1BG118500 Rh1CG141600 Rh1DG157400 Rh1DG185700
rosa_wichuraiana	Rw1G012140 Rw1G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1025
Acc36I	ACCTGC	1 cut(s)	1862
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	3 cut(s)	50, 135, 830
AccB7I	CCANNNNNTGG	1 cut(s)	726
AccI	GTMKAC	2 cut(s)	765, 1708
AciI	CCGC	9 cut(s)	18, 24, 27, 33, 270, 390, 1414, 1545, 2314
AclWI	GGATC	4 cut(s)	196, 461, 1760, 1908
AcoI	YGGCCR	3 cut(s)	249, 267, 649
AcsI	RAATTY	4 cut(s)	520, 1633, 2261, 2303
AcuI	CTGAAG	2 cut(s)	1227, 1737
AcyI	GRCGYC	1 cut(s)	1888
AfaI	GTAC	9 cut(s)	40, 52, 500, 863, 1200, 1218, 1263, 1284, 1952
AfiI	CCNNNNNNNGG	7 cut(s)	20, 279, 726, 1103, 1320, 1577, 2071
AflIII	ACRYGT	2 cut(s)	501, 1018
AgeI	ACCGGT	1 cut(s)	1785
AhlI	ACTAGT	1 cut(s)	1477
AjiI	CACGTC	1 cut(s)	1019
AjnI	CCWGG	4 cut(s)	392, 483, 2065, 2253
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AloI	GAACNNNNNNTCC	2 cut(s)	1464, 1496
Alw21I	GWGCWC	3 cut(s)	1328, 1523, 2112
Alw26I	GTCTC	6 cut(s)	372, 701, 1009, 1185, 1393, 1631
Alw44I	GTGCAC	2 cut(s)	1324, 1519
AlwI	GGATC	4 cut(s)	196, 461, 1760, 1908
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	2 cut(s)	1336, 1815
AoxI	GGCC	6 cut(s)	249, 267, 395, 649, 1084, 2165
ApaLI	GTGCAC	2 cut(s)	1324, 1519
ApeKI	GCWGC	7 cut(s)	96, 243, 583, 675, 1511, 2009, 2204
ApoI	RAATTY	4 cut(s)	520, 1633, 2261, 2303
ArsI	GACNNNNNNTTYG	2 cut(s)	914, 946
AsiGI	ACCGGT	1 cut(s)	1785
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	1026, 2295
AspS9I	GGNCC	3 cut(s)	309, 881, 1084
AsuC2I	CCSGG	3 cut(s)	55, 1898, 1924
AsuHPI	GGTGA	5 cut(s)	341, 754, 932, 1970, 2269
AsuNHI	GCTAGC	2 cut(s)	2060, 2135
AvaI	CYCGRG	2 cut(s)	1336, 1815
AvaII	GGWCC	2 cut(s)	309, 881
BaeGI	GKGCMC	2 cut(s)	1328, 1523
BalI	TGGCCA	1 cut(s)	651
BanI	GGYRCC	3 cut(s)	50, 135, 830
BanII	GRGCYC	2 cut(s)	709, 940
BbsI	GAAGAC	1 cut(s)	1480
Bbv12I	GWGCWC	3 cut(s)	1328, 1523, 2112
BbvI	GCAGC	7 cut(s)	83, 255, 595, 687, 1523, 2021, 2191
BccI	CCATC	6 cut(s)	782, 1143, 1181, 1928, 2303, 2315
BceAI	ACGGC	3 cut(s)	211, 257, 264
BciT130I	CCWGG	4 cut(s)	394, 485, 2067, 2255
BcnI	CCSGG	3 cut(s)	55, 1898, 1924
BcoDI	GTCTC	6 cut(s)	372, 701, 1009, 1185, 1393, 1631
BcuI	ACTAGT	1 cut(s)	1477
BfaI	CTAG	6 cut(s)	734, 1277, 1478, 1662, 2061, 2136
BfmI	CTRYAG	1 cut(s)	1737
BfuAI	ACCTGC	1 cut(s)	1862
Bme1390I	CCNGG	7 cut(s)	55, 394, 485, 1898, 1924, 2067, 2255
Bme18I	GGWCC	2 cut(s)	309, 881
BmeT110I	CYCGRG	2 cut(s)	1336, 1815
BmgBI	CACGTC	1 cut(s)	1019
BmgT120I	GGNCC	3 cut(s)	309, 881, 1084
BmiI	GGNNCC	6 cut(s)	52, 137, 793, 832, 882, 1412
BmrFI	CCNGG	7 cut(s)	55, 394, 485, 1898, 1924, 2067, 2255
BmrI	ACTGGG	1 cut(s)	2013
BmsI	GCATC	5 cut(s)	434, 625, 654, 1342, 1609
BmtI	GCTAGC	2 cut(s)	2064, 2139
BmuI	ACTGGG	1 cut(s)	2013
BpiI	GAAGAC	1 cut(s)	1480
BpmI	CTGGAG	3 cut(s)	1185, 1227, 1847
Bpu10I	CCTNAGC	1 cut(s)	1092
BpuEI	CTTGAG	2 cut(s)	98, 332
BpuMI	CCSGG	3 cut(s)	55, 1898, 1924
BsaBI	GATNNNNATC	1 cut(s)	1669
BsaHI	GRCGYC	1 cut(s)	1888
BsaI	GGTCTC	1 cut(s)	1185
BsaJI	CCNNGG	7 cut(s)	484, 600, 646, 884, 1922, 2065, 2066
BsaWI	WCCGGW	1 cut(s)	1785
BsaXI	ACNNNNNCTCC	4 cut(s)	1182, 1200, 1212, 1230
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 279, 726, 1103, 1320, 1577, 2071
Bse118I	RCCGGY	2 cut(s)	20, 1785
Bse1I	ACTGG	4 cut(s)	69, 1168, 1745, 2008
Bse3DI	GCAATG	5 cut(s)	52, 594, 731, 1117, 1864
Bse8I	GATNNNNATC	1 cut(s)	1669
BseBI	CCWGG	4 cut(s)	394, 485, 2067, 2255
BseDI	CCNNGG	7 cut(s)	484, 600, 646, 884, 1922, 2065, 2066
BseGI	GGATG	5 cut(s)	610, 1192, 2110, 2326, 2335
BseJI	GATNNNNATC	1 cut(s)	1669
BseLI	CCNNNNNNNGG	7 cut(s)	20, 279, 726, 1103, 1320, 1577, 2071
BseMI	GCAATG	5 cut(s)	52, 594, 731, 1117, 1864
BseMII	CTCAG	5 cut(s)	724, 1083, 1388, 1453, 2159
BseNI	ACTGG	4 cut(s)	69, 1168, 1745, 2008
BseRI	GAGGAG	1 cut(s)	2257
BseSI	GKGCMC	2 cut(s)	1328, 1523
BseX3I	CGGCCG	2 cut(s)	249, 267
BseXI	GCAGC	7 cut(s)	83, 255, 595, 687, 1523, 2021, 2191
BseYI	CCCAGC	1 cut(s)	2288
BsgI	GTGCAG	1 cut(s)	1575
Bsh1285I	CGRYCG	2 cut(s)	252, 270
BshFI	GGCC	6 cut(s)	251, 269, 397, 651, 1086, 2167
BshNI	GGYRCC	3 cut(s)	50, 135, 830
BshTI	ACCGGT	1 cut(s)	1785
BsiEI	CGRYCG	2 cut(s)	252, 270
BsiHKAI	GWGCWC	3 cut(s)	1328, 1523, 2112
BsiHKCI	CYCGRG	2 cut(s)	1336, 1815
BsiSI	CCGG	5 cut(s)	21, 54, 1786, 1898, 1924
BslFI	GGGAC	2 cut(s)	1061, 2087
BslI	CCNNNNNNNGG	7 cut(s)	20, 279, 726, 1103, 1320, 1577, 2071
BsmAI	GTCTC	6 cut(s)	372, 701, 1009, 1185, 1393, 1631
BsmBI	CGTCTC	4 cut(s)	701, 1009, 1393, 1631
BsmFI	GGGAC	2 cut(s)	1061, 2087
BsmI	GAATGC	1 cut(s)	1355
BsnI	GGCC	6 cut(s)	251, 269, 397, 651, 1086, 2167
Bso31I	GGTCTC	1 cut(s)	1185
BsoBI	CYCGRG	2 cut(s)	1336, 1815
Bsp1286I	GDGCHC	5 cut(s)	709, 940, 1328, 1523, 2112
Bsp1407I	TGTACA	2 cut(s)	498, 1216
Bsp143I	GATC	5 cut(s)	188, 466, 744, 1752, 1900
BspACI	CCGC	9 cut(s)	18, 24, 27, 33, 270, 390, 1414, 1545, 2314
BspANI	GGCC	6 cut(s)	251, 269, 397, 651, 1086, 2167
BspCNI	CTCAG	5 cut(s)	723, 1084, 1389, 1452, 2158
BspHI	TCATGA	1 cut(s)	2112
BspLI	GGNNCC	6 cut(s)	52, 137, 793, 832, 882, 1412
BspMAI	CTGCAG	1 cut(s)	1741
BspMI	ACCTGC	1 cut(s)	1862
BspOI	GCTAGC	2 cut(s)	2064, 2139
BspPI	GGATC	4 cut(s)	196, 461, 1760, 1908
BspT107I	GGYRCC	3 cut(s)	50, 135, 830
BspTNI	GGTCTC	1 cut(s)	1185
BsrDI	GCAATG	5 cut(s)	52, 594, 731, 1117, 1864
BsrFI	RCCGGY	2 cut(s)	20, 1785
BsrGI	TGTACA	2 cut(s)	498, 1216
BsrI	ACTGG	4 cut(s)	69, 1168, 1745, 2008
BssAI	RCCGGY	2 cut(s)	20, 1785
BssECI	CCNNGG	7 cut(s)	484, 600, 646, 884, 1922, 2065, 2066
BssMI	GATC	5 cut(s)	188, 466, 744, 1752, 1900
BssNAI	GTATAC	1 cut(s)	1709
BssNI	GRCGYC	1 cut(s)	1888
BssT1I	CCWWGG	3 cut(s)	600, 646, 884
Bst1107I	GTATAC	1 cut(s)	1709
Bst2UI	CCWGG	4 cut(s)	394, 485, 2067, 2255
Bst4CI	ACNGT	6 cut(s)	821, 849, 866, 998, 1196, 1593
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	1888
BstAUI	TGTACA	2 cut(s)	498, 1216
BstC8I	GCNNGC	6 cut(s)	22, 241, 872, 2062, 2137, 2169
BstDEI	CTNAG	5 cut(s)	710, 1092, 1397, 1439, 2145
BstF5I	GGATG	5 cut(s)	610, 1192, 2110, 2326, 2335
BstHHI	GCGC	2 cut(s)	1026, 2295
BstKTI	GATC	5 cut(s)	191, 469, 747, 1755, 1903
BstMAI	GTCTC	6 cut(s)	372, 701, 1009, 1185, 1393, 1631
BstMBI	GATC	5 cut(s)	188, 466, 744, 1752, 1900
BstMCI	CGRYCG	2 cut(s)	252, 270
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 684, 1247, 1256, 1361, 1562
BstNI	CCWGG	4 cut(s)	394, 485, 2067, 2255
BstNSI	RCATGY	2 cut(s)	505, 1970
BstSCI	CCNGG	7 cut(s)	53, 392, 483, 1896, 1922, 2065, 2253
BstSFI	CTRYAG	1 cut(s)	1737
BstSLI	GKGCMC	2 cut(s)	1328, 1523
BstV1I	GCAGC	7 cut(s)	83, 255, 595, 687, 1523, 2021, 2191
BstV2I	GAAGAC	1 cut(s)	1480
BstZ17I	GTATAC	1 cut(s)	1709
BstZI	CGGCCG	2 cut(s)	249, 267
BsuRI	GGCC	6 cut(s)	251, 269, 397, 651, 1086, 2167
BtrI	CACGTC	1 cut(s)	1019
BtsCI	GGATG	5 cut(s)	610, 1192, 2110, 2326, 2335
BtsI	GCAGTG	2 cut(s)	1555, 1746
BtsIMutI	CAGTG	4 cut(s)	826, 1555, 1746, 2001
BveI	ACCTGC	1 cut(s)	1862
Cac8I	GCNNGC	6 cut(s)	22, 241, 872, 2062, 2137, 2169
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	1 cut(s)	2112
CfoI	GCGC	2 cut(s)	1026, 2295
Cfr10I	RCCGGY	2 cut(s)	20, 1785
Cfr13I	GGNCC	3 cut(s)	309, 881, 1084
CseI	GACGC	1 cut(s)	1877
Csp6I	GTAC	9 cut(s)	39, 51, 499, 862, 1199, 1217, 1262, 1283, 1951
CspAI	ACCGGT	1 cut(s)	1785
CviAII	CATG	9 cut(s)	106, 502, 579, 721, 1306, 1360, 1967, 2113, 2172
CviQI	GTAC	9 cut(s)	39, 51, 499, 862, 1199, 1217, 1262, 1283, 1951
DdeI	CTNAG	5 cut(s)	710, 1092, 1397, 1439, 2145
DpnI	GATC	5 cut(s)	190, 468, 746, 1754, 1902
DpnII	GATC	5 cut(s)	188, 466, 744, 1752, 1900
EaeI	YGGCCR	3 cut(s)	249, 267, 649
EagI	CGGCCG	2 cut(s)	249, 267
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
EciI	GGCGGA	1 cut(s)	2329
EclXI	CGGCCG	2 cut(s)	249, 267
Eco130I	CCWWGG	3 cut(s)	600, 646, 884
Eco24I	GRGCYC	2 cut(s)	709, 940
Eco31I	GGTCTC	1 cut(s)	1185
Eco47I	GGWCC	2 cut(s)	309, 881
Eco52I	CGGCCG	2 cut(s)	249, 267
Eco57I	CTGAAG	2 cut(s)	1227, 1737
Eco88I	CYCGRG	2 cut(s)	1336, 1815
EcoO109I	RGGNCCY	1 cut(s)	881
EcoRII	CCWGG	4 cut(s)	392, 483, 2065, 2253
EcoT14I	CCWWGG	3 cut(s)	600, 646, 884
EcoT22I	ATGCAT	1 cut(s)	1357
EcoT38I	GRGCYC	2 cut(s)	709, 940
ErhI	CCWWGG	3 cut(s)	600, 646, 884
Esp3I	CGTCTC	4 cut(s)	701, 1009, 1393, 1631
FaeI	CATG	9 cut(s)	109, 505, 582, 724, 1309, 1363, 1970, 2116, 2175
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	2 cut(s)	1061, 2087
FatI	CATG	9 cut(s)	105, 501, 578, 720, 1305, 1359, 1966, 2112, 2171
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	765, 1708
FokI	GGATG	4 cut(s)	617, 1199, 2117, 2333
FriOI	GRGCYC	2 cut(s)	709, 940
FspAI	RTGCGCAY	1 cut(s)	1025
FspBI	CTAG	6 cut(s)	734, 1277, 1478, 1662, 2061, 2136
FspI	TGCGCA	1 cut(s)	1025
GlaI	GCGC	2 cut(s)	1025, 2294
GsaI	CCCAGC	1 cut(s)	2292
GsuI	CTGGAG	3 cut(s)	1185, 1227, 1847
HaeIII	GGCC	6 cut(s)	251, 269, 397, 651, 1086, 2167
HapII	CCGG	5 cut(s)	21, 54, 1786, 1898, 1924
HgaI	GACGC	1 cut(s)	1877
HhaI	GCGC	2 cut(s)	1026, 2295
Hin1I	GRCGYC	1 cut(s)	1888
Hin1II	CATG	9 cut(s)	109, 505, 582, 724, 1309, 1363, 1970, 2116, 2175
Hin6I	GCGC	2 cut(s)	1024, 2293
HinP1I	GCGC	2 cut(s)	1024, 2293
HincII	GTYRAC	1 cut(s)	1892
HindII	GTYRAC	1 cut(s)	1892
HindIII	AAGCTT	1 cut(s)	1563
HpaII	CCGG	5 cut(s)	21, 54, 1786, 1898, 1924
HphI	GGTGA	5 cut(s)	341, 754, 932, 1970, 2269
Hpy188I	TCNGA	9 cut(s)	188, 436, 565, 814, 1442, 1757, 1974, 2148, 2269
Hpy99I	CGWCG	5 cut(s)	151, 262, 265, 268, 2191
HpyAV	CCTTC	5 cut(s)	293, 1097, 1212, 1365, 2311
HpyCH4III	ACNGT	6 cut(s)	821, 849, 866, 998, 1196, 1593
HpyCH4IV	ACGT	5 cut(s)	1007, 1018, 1402, 1598, 2186
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 684, 1247, 1256, 1361, 1562
HpyF3I	CTNAG	5 cut(s)	710, 1092, 1397, 1439, 2145
HpySE526I	ACGT	5 cut(s)	1007, 1018, 1402, 1598, 2186
Hsp92I	GRCGYC	1 cut(s)	1888
Hsp92II	CATG	9 cut(s)	109, 505, 582, 724, 1309, 1363, 1970, 2116, 2175
HspAI	GCGC	2 cut(s)	1024, 2293
KpnI	GGTACC	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	188, 466, 744, 1752, 1900
LmnI	GCTCC	6 cut(s)	572, 791, 1292, 1410, 1828, 2244
Lsp1109I	GCAGC	7 cut(s)	83, 255, 595, 687, 1523, 2021, 2191
LweI	GCATC	5 cut(s)	434, 625, 654, 1342, 1609
MaeI	CTAG	6 cut(s)	734, 1277, 1478, 1662, 2061, 2136
MaeII	ACGT	5 cut(s)	1007, 1018, 1402, 1598, 2186
MaeIII	GTNAC	4 cut(s)	101, 329, 415, 920
MalI	GATC	5 cut(s)	190, 468, 746, 1754, 1902
MboI	GATC	5 cut(s)	188, 466, 744, 1752, 1900
MboII	GAAGA	8 cut(s)	154, 157, 316, 620, 913, 1485, 1571, 2066
MfeI	CAATTG	2 cut(s)	1318, 2095
MhlI	GDGCHC	5 cut(s)	709, 940, 1328, 1523, 2112
MlsI	TGGCCA	1 cut(s)	651
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	7 cut(s)	263, 326, 724, 761, 1727, 1807, 1984
MmeI	TCCRAC	2 cut(s)	831, 1776
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	1 cut(s)	1357
MreI	CGCCGGCG	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	9 cut(s)	78, 342, 1032, 1452, 1530, 1574, 1604, 1650, 2037
MslI	CAYNNNNRTG	3 cut(s)	1143, 1381, 1847
Msp20I	TGGCCA	1 cut(s)	651
MspI	CCGG	5 cut(s)	21, 54, 1786, 1898, 1924
MspR9I	CCNGG	7 cut(s)	55, 394, 485, 1898, 1924, 2067, 2255
MunI	CAATTG	2 cut(s)	1318, 2095
Mva1269I	GAATGC	1 cut(s)	1355
MvaI	CCWGG	4 cut(s)	394, 485, 2067, 2255
MwoI	GCNNNNNNNGC	6 cut(s)	30, 684, 1247, 1256, 1361, 1562
NaeI	GCCGGC	1 cut(s)	22
NciI	CCSGG	3 cut(s)	55, 1898, 1924
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	5 cut(s)	188, 466, 744, 1752, 1900
NgoMIV	GCCGGC	1 cut(s)	20
NheI	GCTAGC	2 cut(s)	2060, 2135
NlaIII	CATG	9 cut(s)	109, 505, 582, 724, 1309, 1363, 1970, 2116, 2175
NlaIV	GGNNCC	6 cut(s)	52, 137, 793, 832, 882, 1412
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	3 cut(s)	329, 415, 920
NsbI	TGCGCA	1 cut(s)	1025
NsiI	ATGCAT	1 cut(s)	1357
NspI	RCATGY	2 cut(s)	505, 1970
PaeR7I	CTCGAG	1 cut(s)	1815
PagI	TCATGA	1 cut(s)	2112
PasI	CCCWGGG	1 cut(s)	2066
PciI	ACATGT	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	2 cut(s)	254, 700
PctI	GAATGC	1 cut(s)	1355
PdiI	GCCGGC	1 cut(s)	22
PfeI	GAWTC	7 cut(s)	437, 973, 1211, 1309, 1799, 1875, 1996
PflMI	CCANNNNNTGG	1 cut(s)	726
PinAI	ACCGGT	1 cut(s)	1785
PleI	GAGTC	7 cut(s)	262, 326, 724, 761, 1727, 1807, 1983
PpsI	GAGTC	7 cut(s)	262, 326, 724, 761, 1727, 1807, 1983
PpuMI	RGGWCCY	1 cut(s)	881
PscI	ACATGT	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	881
Psp6I	CCWGG	4 cut(s)	392, 483, 2065, 2253
PspFI	CCCAGC	1 cut(s)	2288
PspGI	CCWGG	4 cut(s)	392, 483, 2065, 2253
PspN4I	GGNNCC	6 cut(s)	52, 137, 793, 832, 882, 1412
PspPI	GGNCC	3 cut(s)	309, 881, 1084
PspPPI	RGGWCCY	1 cut(s)	881
PspXI	VCTCGAGB	1 cut(s)	1815
PstI	CTGCAG	1 cut(s)	1741
PstNI	CAGNNNCTG	1 cut(s)	434
RsaI	GTAC	9 cut(s)	40, 52, 500, 863, 1200, 1218, 1263, 1284, 1952
RsaNI	GTAC	9 cut(s)	39, 51, 499, 862, 1199, 1217, 1262, 1283, 1951
RseI	CAYNNNNRTG	3 cut(s)	1143, 1381, 1847
SaqAI	TTAA	9 cut(s)	78, 342, 1032, 1452, 1530, 1574, 1604, 1650, 2037
Sau3AI	GATC	5 cut(s)	188, 466, 744, 1752, 1900
Sau96I	GGNCC	3 cut(s)	309, 881, 1084
SchI	GAGTC	7 cut(s)	263, 326, 724, 761, 1727, 1807, 1984
ScrFI	CCNGG	7 cut(s)	55, 394, 485, 1898, 1924, 2067, 2255
SduI	GDGCHC	5 cut(s)	709, 940, 1328, 1523, 2112
SfaNI	GCATC	5 cut(s)	434, 625, 654, 1342, 1609
SfcI	CTRYAG	1 cut(s)	1737
Sfr274I	CTCGAG	1 cut(s)	1815
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	309, 881
SlaI	CTCGAG	1 cut(s)	1815
SmiMI	CAYNNNNRTG	3 cut(s)	1143, 1381, 1847
SmlI	CTYRAG	3 cut(s)	113, 347, 1815
SmoI	CTYRAG	3 cut(s)	113, 347, 1815
SpeI	ACTAGT	1 cut(s)	1477
SsiI	CCGC	9 cut(s)	18, 24, 27, 33, 270, 390, 1414, 1545, 2314
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	6 cut(s)	734, 1277, 1478, 1662, 2061, 2136
StyD4I	CCNGG	7 cut(s)	53, 392, 483, 1896, 1922, 2065, 2253
StyI	CCWWGG	3 cut(s)	600, 646, 884
TaaI	ACNGT	6 cut(s)	821, 849, 866, 998, 1196, 1593
TaiI	ACGT	5 cut(s)	1010, 1021, 1405, 1601, 2189
TaqI	TCGA	5 cut(s)	703, 940, 1143, 1816, 2189
TatI	WGTACW	5 cut(s)	498, 1216, 1261, 1282, 1950
TauI	GCSGC	6 cut(s)	20, 27, 272, 392, 1416, 1548
TfiI	GAWTC	7 cut(s)	437, 973, 1211, 1309, 1799, 1875, 1996
Tru1I	TTAA	9 cut(s)	78, 342, 1032, 1452, 1530, 1574, 1604, 1650, 2037
Tru9I	TTAA	9 cut(s)	78, 342, 1032, 1452, 1530, 1574, 1604, 1650, 2037
TscAI	CASTG	4 cut(s)	826, 1555, 1746, 2008
TseFI	GTSAC	3 cut(s)	329, 415, 920
TseI	GCWGC	7 cut(s)	96, 243, 583, 675, 1511, 2009, 2204
Tsp45I	GTSAC	3 cut(s)	329, 415, 920
TspDTI	ATGAA	8 cut(s)	312, 525, 621, 1071, 1348, 1422, 1659, 2129
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	4 cut(s)	826, 1555, 1746, 2008
Van91I	CCANNNNNTGG	1 cut(s)	726
VneI	GTGCAC	2 cut(s)	1324, 1519
VpaK11BI	GGWCC	2 cut(s)	309, 881
XapI	RAATTY	4 cut(s)	520, 1633, 2261, 2303
XbaI	TCTAGA	2 cut(s)	733, 1661
XceI	RCATGY	2 cut(s)	505, 1970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XhoI	CTCGAG	1 cut(s)	1815
XmiI	GTMKAC	2 cut(s)	765, 1708
XspI	CTAG	6 cut(s)	734, 1277, 1478, 1662, 2061, 2136
Zsp2I	ATGCAT	1 cut(s)	1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.