Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008486

Physical Location & Seq

Genomic Coordinates Forward (+)

20266195 .. 20271660

Gene Structure 5466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGGGTTTCAGTCCTGCGGGCGGCGGCGGCGGTGGAGGCGGTGGTACGAGCAATGGTACCGGGAATAATAGCACCAGTAATATTAATAATCACAATAATAATAGTAGCTGCTGTAACATGAGCCTCAAGTGTAGGTGTAAATGGAGGTGCCTGATGTCGTCGGGGTTCGTTTTCTTCTTCGGCTGTTTTGTGTTGTTTGGATCAGTCGCTACGATTTATGTGTGGTTTGCTTTCACGCCGTATTATTACGCTCGGAGCACGGCGGTGGAGTCGTCGTCGTCGGCCGCCGTGCTTGGGTGTCAGGAGGACAATGAAGGGTCTTGGTCCGTTGGTGTTTTCTTCGGTGACTCTCCCTTTAATCTCAAGCCCATTGAGGCTACGAATGTATGGAGAGACAAGAGTGCCGCCTGGCCTGTGGCAAACCCTGTTGTGACTTGTGCTTCAGTTTCTGAATCTGGTTTCCCAAGTAATTTTGTGGCTGATCCTTTCCTTTATGTCCAGGGAGATACTTTGTACATGTTCTATGAAACCAAAAATTCAATCACTATGCAAGGAGATATTGGGGTTTCAAAAAGCTCTGATAAAGGAGCAACATGGCAGCAATTAGGCATTGCCTTGGATGAAGAGTGGCATCTCTCTTATCCATATGTCTTTCCCTACCTTGGCCATATATATATGATGCCTGAAAGCAGCACAAATGGCGAAGTTCGTCTCTATCGAGCCCTCAGTTTTCCCATGCAATGGACTCTAGAAAAGGTGATCTTGAAAAAGCCTCTTGTCGACTCATTCCTTATCAATTATGATGGAGCCTATTGGCTTTTCGGTTCAGACCACAGTGGATTTGGCACCACAAAGAATGGACAGTTGGAAATCTGGTACAGTAGCTCGCCTTTGGGTCCTTGGAAACCACACAAGAAGAACCCTATATATAATGGTGACAAGAGCTTTGGGGCTCGAAATGGAGGCAGACCATTTTTTTACAACGGGAGTCTCTATCGCTTTGGTCAAGACTGTGCTGAAACGTATGGGAGACGTGTGCGCACCTTTAAGGTGGAAGTTCTTACCAAAAATGAATATAAGGAAGTTGAAGTCCCGTTGGGCCTTCCTGAGCCAAATAAGGGTCGCAATGCTTGGAATGGTGTTCGCTTCCATCATCTCGATGTGCAACAACTAAATACTGGAGGGTGGATTGCAGTAATGGATGGAGACCGTGTACCTTCTGGAGATTCTGTACACAGGTTTATTGTTGGTAGTGCTTCAGTTGCCATTGTCGCTATACTTGTTATATTACTAGGTGTACTACTTGGAGCTGTGAAGTGCATGATTCCCCCCAATTGGTGCACTCACAACTCGGGTAAGAGAAGGGATGCATTCATGGCTTGTGAAAGGTCATATCTGTGTTCGTCCAAACTGAGACGTTTTTGCAGCCGCTTGAACAGAGCAGTTTCATTCCTCAGAGGTAGGATTAAGCCTAATACCTGTGCTGGAAGACTAGTTCTTGCTATATATTTGGCATTTGGAGTGGCAGCTATGTGCACAGGGGTTAAATATATCTATGGCGGCAGTGGTGCAGAAGAAGCTTACCCATTAAAAGGTCATTACTCACAGTTCACGTTATTAACAATGACTTATGATGCTCGTCTCTGGAATTTGAAAATGTATGTTAAACACTATTCTAGATGTTCATCGGTAAGAGAAATTGTTGTGGTGTGGAACAAGGGTATACCTCCTGAAGCGAGTGATCTTGACTCTGCAGTGCCAGTTAGGATCAGAGTAGAGAAACAGAACTCCCTGAATAACCGGTTCAAGTTGGATTCTTTGATAAAGACTCGAGCTGTTCTGGAGCTTGATGACGACATTATGATGACCTGCAATGATATTGAGAGAGGATTCAGGATATGGCGTCAACACCCAGATCGTATTGTGGGTTTCTACCCCCGGCTCATTGATGGAAGTCCATTGAAGTACAGAGGTGAGAAACATGCTCGGAGTCATAGAGGCTATAATATGATTCTCACTGGGGCAGCTTTCCTTGATAGCCAAGTTGCTTTTAAGAGGTATTGGAGTGAAGAAGCTAGCCCAGGGAGGGACTTTGTGGACAAGTCTTTCAATTGCGAGGACGTGCTTATGAATTACCTGTATGCAAATGCTAGCTCATCTCAGAATGTGGAGTATGTGAGGCCAGCATGGGCGATAGATACGTCGAAGTTATCTGGTGCTGCTATTAGCCGAAATACCCAAGTTCACTACAACAAGAGGAGCAACTGCCTGGTGAAATTTTCTGAAATGTATGGAACTTTGGCTGGGCGCAAGTGGGAATTTGATGGGCGGAAGGATGGGTGGGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006029 GO:0006040 GO:0006044 GO:0006082 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008101 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008589 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0015012 GO:0015014 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030111 GO:0030166 GO:0030177 GO:0030201 GO:0030202 GO:0030203 GO:0030204 GO:0030206 GO:0030210 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045880 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050508 GO:0050509 GO:0050650 GO:0050654 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060828 GO:0065007 GO:0071704 GO:0090092 GO:0090097 GO:0090098 GO:0090100 GO:0090263 GO:1901071 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903510

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

783

Amino Acids

87.72

Weight (kDa)

9.03

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GINT1_N	PF24793	100 - 403	6.8e-178	Glucosamine inositolphosphorylceramide transferase 1, N-terminal
Glyco_transf_64	PF09258	537 - 772	1.8e-63	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04500
fragaria_vesca	FvH4_7g07030 FvH4_7g07030
malus_domestica	MD02G1240800.v1.1 MD02G1240900.v1.1 MD07G1076200.v1.1
prunus_persica	Prupe.2G096900_v2.0.a1
pyrus_communis	pycom02g20590 pycom07g06000
rosa_chinensis	RchiOBHm_Chr1g0336981 RchiOBHm_Chr1g0359101 RchiOBHm_Chr4g0385241
rosa_laevigata	RLG00000029317
rosa_multiflora	Rmu_sc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026440
rosa_rugosa	Rorug01G0129300
rosa_samantha	Rh1AG150300 Rh1BG118500 Rh1CG141600 Rh1DG157400 Rh1DG185700
rosa_wichuraiana	Rw1G012140 Rw1G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1040
Acc36I	ACCTGC	1 cut(s)	1877
Acc65I	GGTACC	1 cut(s)	56
AccB1I	GGYRCC	3 cut(s)	56, 147, 845
AccB7I	CCANNNNNTGG	1 cut(s)	741
AccI	GTMKAC	2 cut(s)	780, 1723
AclWI	GGATC	3 cut(s)	208, 476, 1775
AcoI	YGGCCR	2 cut(s)	282, 664
AcsI	RAATTY	4 cut(s)	535, 1648, 2276, 2318
AcuI	CTGAAG	3 cut(s)	426, 1242, 1752
AcyI	GRCGYC	1 cut(s)	1903
AfaI	GTAC	8 cut(s)	46, 58, 515, 878, 1215, 1233, 1299, 1967
AfiI	CCNNNNNNNGG	8 cut(s)	20, 294, 662, 741, 1118, 1335, 1592, 2086
AflIII	ACRYGT	2 cut(s)	516, 1033
AgeI	ACCGGT	1 cut(s)	1800
AgsI	TTSAA	9 cut(s)	540, 570, 766, 1088, 1435, 1654, 1807, 1963, 2110
AhlI	ACTAGT	1 cut(s)	1492
AjiI	CACGTC	2 cut(s)	1034, 2122
AjnI	CCWGG	4 cut(s)	407, 498, 2080, 2268
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
AleI	CACNNNNGTG	1 cut(s)	263
AloI	GAACNNNNNNTCC	2 cut(s)	1479, 1511
Alw21I	GWGCWC	3 cut(s)	260, 1343, 1538
Alw26I	GTCTC	7 cut(s)	387, 716, 995, 1024, 1200, 1408, 1646
Alw44I	GTGCAC	2 cut(s)	1339, 1534
AlwI	GGATC	3 cut(s)	208, 476, 1775
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	2 cut(s)	1351, 1830
AoxI	GGCC	5 cut(s)	282, 410, 664, 1099, 2180
ApaLI	GTGCAC	2 cut(s)	1339, 1534
ApeKI	GCWGC	7 cut(s)	108, 598, 690, 1425, 1526, 2024, 2219
ApoI	RAATTY	4 cut(s)	535, 1648, 2276, 2318
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
AseI	ATTAAT	1 cut(s)	84
AsiGI	ACCGGT	1 cut(s)	1800
Asp718I	GGTACC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	1041, 2310
AspS9I	GGNCC	3 cut(s)	324, 896, 1099
AsuC2I	CCSGG	2 cut(s)	61, 1939
AsuHPI	GGTGA	5 cut(s)	356, 769, 947, 1985, 2284
AsuNHI	GCTAGC	2 cut(s)	2075, 2150
AvaI	CYCGRG	2 cut(s)	1351, 1830
AvaII	GGWCC	2 cut(s)	324, 896
BaeGI	GKGCMC	2 cut(s)	1343, 1538
BalI	TGGCCA	1 cut(s)	666
BanI	GGYRCC	3 cut(s)	56, 147, 845
BanII	GRGCYC	2 cut(s)	724, 955
BbsI	GAAGAC	1 cut(s)	1495
Bbv12I	GWGCWC	3 cut(s)	260, 1343, 1538
BbvI	GCAGC	7 cut(s)	95, 610, 702, 1437, 1538, 2036, 2206
BccI	CCATC	6 cut(s)	797, 1158, 1196, 1943, 2318, 2330
BceAI	ACGGC	3 cut(s)	223, 272, 276
BciT130I	CCWGG	4 cut(s)	409, 500, 2082, 2270
BcnI	CCSGG	2 cut(s)	61, 1939
BcoDI	GTCTC	7 cut(s)	387, 716, 995, 1024, 1200, 1408, 1646
BcuI	ACTAGT	1 cut(s)	1492
BfaI	CTAG	6 cut(s)	749, 1292, 1493, 1677, 2076, 2151
BfmI	CTRYAG	1 cut(s)	1752
BfuAI	ACCTGC	1 cut(s)	1877
Bme1390I	CCNGG	6 cut(s)	61, 409, 500, 1939, 2082, 2270
Bme18I	GGWCC	2 cut(s)	324, 896
BmeT110I	CYCGRG	2 cut(s)	1351, 1830
BmgBI	CACGTC	2 cut(s)	1034, 2122
BmgT120I	GGNCC	3 cut(s)	324, 896, 1099
BmiI	GGNNCC	5 cut(s)	58, 149, 808, 847, 897
BmrFI	CCNGG	6 cut(s)	61, 409, 500, 1939, 2082, 2270
BmrI	ACTGGG	1 cut(s)	2028
BmsI	GCATC	4 cut(s)	640, 669, 1357, 1624
BmtI	GCTAGC	2 cut(s)	2079, 2154
BmuI	ACTGGG	1 cut(s)	2028
BpiI	GAAGAC	1 cut(s)	1495
BpmI	CTGGAG	3 cut(s)	1200, 1242, 1862
Bpu10I	CCTNAGC	1 cut(s)	1107
BpuEI	CTTGAG	2 cut(s)	110, 347
BpuMI	CCSGG	2 cut(s)	61, 1939
BsaBI	GATNNNNATC	1 cut(s)	1684
BsaHI	GRCGYC	1 cut(s)	1903
BsaI	GGTCTC	1 cut(s)	1200
BsaJI	CCNNGG	7 cut(s)	499, 615, 661, 899, 1937, 2080, 2081
BsaWI	WCCGGW	1 cut(s)	1800
BsaXI	ACNNNNNCTCC	6 cut(s)	260, 290, 1197, 1215, 1227, 1245
Bsc4I	CCNNNNNNNGG	8 cut(s)	20, 294, 662, 741, 1118, 1335, 1592, 2086
Bse118I	RCCGGY	1 cut(s)	1800
Bse1I	ACTGG	4 cut(s)	75, 1183, 1760, 2023
Bse3DI	GCAATG	5 cut(s)	58, 609, 746, 1132, 1879
Bse8I	GATNNNNATC	1 cut(s)	1684
BseBI	CCWGG	4 cut(s)	409, 500, 2082, 2270
BseDI	CCNNGG	7 cut(s)	499, 615, 661, 899, 1937, 2080, 2081
BseGI	GGATG	5 cut(s)	625, 1207, 1372, 2341, 2350
BseJI	GATNNNNATC	1 cut(s)	1684
BseLI	CCNNNNNNNGG	8 cut(s)	20, 294, 662, 741, 1118, 1335, 1592, 2086
BseMI	GCAATG	5 cut(s)	58, 609, 746, 1132, 1879
BseMII	CTCAG	5 cut(s)	739, 1098, 1403, 1468, 2174
BseNI	ACTGG	4 cut(s)	75, 1183, 1760, 2023
BseRI	GAGGAG	1 cut(s)	2272
BseSI	GKGCMC	2 cut(s)	1343, 1538
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	7 cut(s)	95, 610, 702, 1437, 1538, 2036, 2206
BseYI	CCCAGC	1 cut(s)	2303
BsgI	GTGCAG	1 cut(s)	1590
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	5 cut(s)	284, 412, 666, 1101, 2182
BshNI	GGYRCC	3 cut(s)	56, 147, 845
BshTI	ACCGGT	1 cut(s)	1800
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	3 cut(s)	260, 1343, 1538
BsiHKCI	CYCGRG	2 cut(s)	1351, 1830
BsiSI	CCGG	3 cut(s)	60, 1801, 1939
BslFI	GGGAC	2 cut(s)	1076, 2102
BslI	CCNNNNNNNGG	8 cut(s)	20, 294, 662, 741, 1118, 1335, 1592, 2086
BsmAI	GTCTC	7 cut(s)	387, 716, 995, 1024, 1200, 1408, 1646
BsmBI	CGTCTC	4 cut(s)	716, 1024, 1408, 1646
BsmFI	GGGAC	2 cut(s)	1076, 2102
BsmI	GAATGC	1 cut(s)	1370
BsnI	GGCC	5 cut(s)	284, 412, 666, 1101, 2182
Bso31I	GGTCTC	1 cut(s)	1200
BsoBI	CYCGRG	2 cut(s)	1351, 1830
Bsp1286I	GDGCHC	5 cut(s)	260, 724, 955, 1343, 1538
Bsp1407I	TGTACA	2 cut(s)	513, 1231
Bsp143I	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
BspANI	GGCC	5 cut(s)	284, 412, 666, 1101, 2182
BspCNI	CTCAG	5 cut(s)	738, 1099, 1404, 1467, 2173
BspLI	GGNNCC	5 cut(s)	58, 149, 808, 847, 897
BspMAI	CTGCAG	1 cut(s)	1756
BspMI	ACCTGC	1 cut(s)	1877
BspOI	GCTAGC	2 cut(s)	2079, 2154
BspPI	GGATC	3 cut(s)	208, 476, 1775
BspT107I	GGYRCC	3 cut(s)	56, 147, 845
BspTNI	GGTCTC	1 cut(s)	1200
BsrDI	GCAATG	5 cut(s)	58, 609, 746, 1132, 1879
BsrFI	RCCGGY	1 cut(s)	1800
BsrGI	TGTACA	2 cut(s)	513, 1231
BsrI	ACTGG	4 cut(s)	75, 1183, 1760, 2023
BssAI	RCCGGY	1 cut(s)	1800
BssECI	CCNNGG	7 cut(s)	499, 615, 661, 899, 1937, 2080, 2081
BssMI	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
BssNAI	GTATAC	1 cut(s)	1724
BssNI	GRCGYC	1 cut(s)	1903
BssT1I	CCWWGG	3 cut(s)	615, 661, 899
Bst1107I	GTATAC	1 cut(s)	1724
Bst2UI	CCWGG	4 cut(s)	409, 500, 2082, 2270
Bst4CI	ACNGT	6 cut(s)	836, 864, 881, 1013, 1211, 1608
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	1 cut(s)	1903
BstAUI	TGTACA	2 cut(s)	513, 1231
BstC8I	GCNNGC	5 cut(s)	19, 887, 2077, 2152, 2184
BstDEI	CTNAG	5 cut(s)	725, 1107, 1412, 1454, 2160
BstF5I	GGATG	5 cut(s)	625, 1207, 1372, 2341, 2350
BstHHI	GCGC	2 cut(s)	1041, 2310
BstKTI	GATC	6 cut(s)	203, 484, 762, 1744, 1770, 1918
BstMAI	GTCTC	7 cut(s)	387, 716, 995, 1024, 1200, 1408, 1646
BstMBI	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 36, 699, 1262, 1271, 1376, 1577
BstNI	CCWGG	4 cut(s)	409, 500, 2082, 2270
BstNSI	RCATGY	2 cut(s)	520, 1985
BstSCI	CCNGG	6 cut(s)	59, 407, 498, 1937, 2080, 2268
BstSFI	CTRYAG	1 cut(s)	1752
BstSLI	GKGCMC	2 cut(s)	1343, 1538
BstV1I	GCAGC	7 cut(s)	95, 610, 702, 1437, 1538, 2036, 2206
BstV2I	GAAGAC	1 cut(s)	1495
BstZ17I	GTATAC	1 cut(s)	1724
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	5 cut(s)	284, 412, 666, 1101, 2182
BtrI	CACGTC	2 cut(s)	1034, 2122
BtsCI	GGATG	5 cut(s)	625, 1207, 1372, 2341, 2350
BtsI	GCAGTG	2 cut(s)	1570, 1761
BtsIMutI	CAGTG	4 cut(s)	841, 1570, 1761, 2016
BveI	ACCTGC	1 cut(s)	1877
Cac8I	GCNNGC	5 cut(s)	19, 887, 2077, 2152, 2184
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	2 cut(s)	1041, 2310
Cfr10I	RCCGGY	1 cut(s)	1800
Cfr13I	GGNCC	3 cut(s)	324, 896, 1099
CseI	GACGC	1 cut(s)	1892
Csp6I	GTAC	8 cut(s)	45, 57, 514, 877, 1214, 1232, 1298, 1966
CspAI	ACCGGT	1 cut(s)	1800
CviAII	CATG	8 cut(s)	118, 517, 594, 736, 1321, 1375, 1982, 2187
CviQI	GTAC	8 cut(s)	45, 57, 514, 877, 1214, 1232, 1298, 1966
DdeI	CTNAG	5 cut(s)	725, 1107, 1412, 1454, 2160
DpnI	GATC	6 cut(s)	202, 483, 761, 1743, 1769, 1917
DpnII	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
EaeI	YGGCCR	2 cut(s)	282, 664
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	2344
EclXI	CGGCCG	1 cut(s)	282
Eco130I	CCWWGG	3 cut(s)	615, 661, 899
Eco24I	GRGCYC	2 cut(s)	724, 955
Eco31I	GGTCTC	1 cut(s)	1200
Eco47I	GGWCC	2 cut(s)	324, 896
Eco52I	CGGCCG	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	426, 1242, 1752
Eco88I	CYCGRG	2 cut(s)	1351, 1830
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRII	CCWGG	4 cut(s)	407, 498, 2080, 2268
EcoT14I	CCWWGG	3 cut(s)	615, 661, 899
EcoT22I	ATGCAT	1 cut(s)	1372
EcoT38I	GRGCYC	2 cut(s)	724, 955
ErhI	CCWWGG	3 cut(s)	615, 661, 899
Esp3I	CGTCTC	4 cut(s)	716, 1024, 1408, 1646
FaeI	CATG	8 cut(s)	121, 520, 597, 739, 1324, 1378, 1985, 2190
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	2 cut(s)	1076, 2102
FatI	CATG	8 cut(s)	117, 516, 593, 735, 1320, 1374, 1981, 2186
FauI	CCCGC	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	2 cut(s)	780, 1723
FokI	GGATG	4 cut(s)	632, 1214, 1379, 2348
FriOI	GRGCYC	2 cut(s)	724, 955
FspAI	RTGCGCAY	1 cut(s)	1040
FspBI	CTAG	6 cut(s)	749, 1292, 1493, 1677, 2076, 2151
FspI	TGCGCA	1 cut(s)	1040
GlaI	GCGC	2 cut(s)	1040, 2309
GsaI	CCCAGC	1 cut(s)	2307
GsuI	CTGGAG	3 cut(s)	1200, 1242, 1862
HaeIII	GGCC	5 cut(s)	284, 412, 666, 1101, 2182
HapII	CCGG	3 cut(s)	60, 1801, 1939
HgaI	GACGC	1 cut(s)	1892
HhaI	GCGC	2 cut(s)	1041, 2310
Hin1I	GRCGYC	1 cut(s)	1903
Hin1II	CATG	8 cut(s)	121, 520, 597, 739, 1324, 1378, 1985, 2190
Hin6I	GCGC	2 cut(s)	1039, 2308
HinP1I	GCGC	2 cut(s)	1039, 2308
HincII	GTYRAC	2 cut(s)	781, 1907
HindII	GTYRAC	2 cut(s)	781, 1907
HindIII	AAGCTT	1 cut(s)	1578
HpaII	CCGG	3 cut(s)	60, 1801, 1939
HphI	GGTGA	5 cut(s)	356, 769, 947, 1985, 2284
Hpy188I	TCNGA	9 cut(s)	255, 451, 580, 829, 1457, 1772, 1989, 2163, 2284
Hpy99I	CGWCG	5 cut(s)	163, 277, 280, 283, 2206
HpyAV	CCTTC	5 cut(s)	308, 1112, 1227, 1356, 2326
HpyCH4III	ACNGT	6 cut(s)	836, 864, 881, 1013, 1211, 1608
HpyCH4IV	ACGT	6 cut(s)	1022, 1033, 1417, 1613, 2121, 2201
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 36, 699, 1262, 1271, 1376, 1577
HpyF3I	CTNAG	5 cut(s)	725, 1107, 1412, 1454, 2160
HpySE526I	ACGT	6 cut(s)	1022, 1033, 1417, 1613, 2121, 2201
Hsp92I	GRCGYC	1 cut(s)	1903
Hsp92II	CATG	8 cut(s)	121, 520, 597, 739, 1324, 1378, 1985, 2190
HspAI	GCGC	2 cut(s)	1039, 2308
KpnI	GGTACC	1 cut(s)	60
Kzo9I	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
LmnI	GCTCC	6 cut(s)	255, 587, 806, 1307, 1843, 2259
Lsp1109I	GCAGC	7 cut(s)	95, 610, 702, 1437, 1538, 2036, 2206
LweI	GCATC	4 cut(s)	640, 669, 1357, 1624
MaeI	CTAG	6 cut(s)	749, 1292, 1493, 1677, 2076, 2151
MaeII	ACGT	6 cut(s)	1022, 1033, 1417, 1613, 2121, 2201
MaeIII	GTNAC	4 cut(s)	113, 344, 430, 935
MalI	GATC	6 cut(s)	202, 483, 761, 1743, 1769, 1917
MboI	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
MboII	GAAGA	8 cut(s)	166, 169, 331, 635, 928, 1500, 1586, 2081
MfeI	CAATTG	2 cut(s)	1333, 2110
MhlI	GDGCHC	5 cut(s)	260, 724, 955, 1343, 1538
MlsI	TGGCCA	1 cut(s)	666
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	8 cut(s)	278, 341, 739, 776, 997, 1742, 1822, 1999
MmeI	TCCRAC	2 cut(s)	846, 1791
Mox20I	TGGCCA	1 cut(s)	666
Mph1103I	ATGCAT	1 cut(s)	1372
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	9 cut(s)	84, 357, 1047, 1467, 1545, 1589, 1619, 1665, 2052
MslI	CAYNNNNRTG	4 cut(s)	263, 1158, 1396, 1862
Msp20I	TGGCCA	1 cut(s)	666
MspI	CCGG	3 cut(s)	60, 1801, 1939
MspR9I	CCNGG	6 cut(s)	61, 409, 500, 1939, 2082, 2270
MunI	CAATTG	2 cut(s)	1333, 2110
Mva1269I	GAATGC	1 cut(s)	1370
MvaI	CCWGG	4 cut(s)	409, 500, 2082, 2270
MwoI	GCNNNNNNNGC	7 cut(s)	27, 36, 699, 1262, 1271, 1376, 1577
NciI	CCSGG	2 cut(s)	61, 1939
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
NheI	GCTAGC	2 cut(s)	2075, 2150
NlaIII	CATG	8 cut(s)	121, 520, 597, 739, 1324, 1378, 1985, 2190
NlaIV	GGNNCC	5 cut(s)	58, 149, 808, 847, 897
NmuCI	GTSAC	3 cut(s)	344, 430, 935
NsbI	TGCGCA	1 cut(s)	1040
NsiI	ATGCAT	1 cut(s)	1372
NspI	RCATGY	2 cut(s)	520, 1985
OliI	CACNNNNGTG	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	1830
PasI	CCCWGGG	1 cut(s)	2081
PciI	ACATGT	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	715
PctI	GAATGC	1 cut(s)	1370
PfeI	GAWTC	6 cut(s)	452, 1226, 1324, 1814, 1890, 2011
PflMI	CCANNNNNTGG	1 cut(s)	741
PinAI	ACCGGT	1 cut(s)	1800
PleI	GAGTC	8 cut(s)	277, 341, 739, 776, 996, 1742, 1822, 1998
PpsI	GAGTC	8 cut(s)	277, 341, 739, 776, 996, 1742, 1822, 1998
PpuMI	RGGWCCY	1 cut(s)	896
PscI	ACATGT	1 cut(s)	516
PshBI	ATTAAT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	896
Psp6I	CCWGG	4 cut(s)	407, 498, 2080, 2268
PspFI	CCCAGC	1 cut(s)	2303
PspGI	CCWGG	4 cut(s)	407, 498, 2080, 2268
PspN4I	GGNNCC	5 cut(s)	58, 149, 808, 847, 897
PspPI	GGNCC	3 cut(s)	324, 896, 1099
PspPPI	RGGWCCY	1 cut(s)	896
PspXI	VCTCGAGB	1 cut(s)	1830
PstI	CTGCAG	1 cut(s)	1756
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	8 cut(s)	46, 58, 515, 878, 1215, 1233, 1299, 1967
RsaNI	GTAC	8 cut(s)	45, 57, 514, 877, 1214, 1232, 1298, 1966
RseI	CAYNNNNRTG	4 cut(s)	263, 1158, 1396, 1862
SalI	GTCGAC	1 cut(s)	779
SaqAI	TTAA	9 cut(s)	84, 357, 1047, 1467, 1545, 1589, 1619, 1665, 2052
Sau3AI	GATC	6 cut(s)	200, 481, 759, 1741, 1767, 1915
Sau96I	GGNCC	3 cut(s)	324, 896, 1099
SchI	GAGTC	8 cut(s)	278, 341, 739, 776, 997, 1742, 1822, 1999
ScrFI	CCNGG	6 cut(s)	61, 409, 500, 1939, 2082, 2270
SduI	GDGCHC	5 cut(s)	260, 724, 955, 1343, 1538
SfaNI	GCATC	4 cut(s)	640, 669, 1357, 1624
SfcI	CTRYAG	1 cut(s)	1752
Sfr274I	CTCGAG	1 cut(s)	1830
SinI	GGWCC	2 cut(s)	324, 896
SlaI	CTCGAG	1 cut(s)	1830
SmiMI	CAYNNNNRTG	4 cut(s)	263, 1158, 1396, 1862
SmlI	CTYRAG	3 cut(s)	125, 362, 1830
SmoI	CTYRAG	3 cut(s)	125, 362, 1830
SpeI	ACTAGT	1 cut(s)	1492
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	6 cut(s)	749, 1292, 1493, 1677, 2076, 2151
StyD4I	CCNGG	6 cut(s)	59, 407, 498, 1937, 2080, 2268
StyI	CCWWGG	3 cut(s)	615, 661, 899
TaaI	ACNGT	6 cut(s)	836, 864, 881, 1013, 1211, 1608
TaiI	ACGT	6 cut(s)	1025, 1036, 1420, 1616, 2124, 2204
TaqI	TCGA	6 cut(s)	718, 780, 955, 1158, 1831, 2204
TatI	WGTACW	4 cut(s)	513, 1231, 1297, 1965
TauI	GCSGC	7 cut(s)	24, 27, 30, 287, 407, 1431, 1563
TfiI	GAWTC	6 cut(s)	452, 1226, 1324, 1814, 1890, 2011
Tru1I	TTAA	9 cut(s)	84, 357, 1047, 1467, 1545, 1589, 1619, 1665, 2052
Tru9I	TTAA	9 cut(s)	84, 357, 1047, 1467, 1545, 1589, 1619, 1665, 2052
TscAI	CASTG	4 cut(s)	841, 1570, 1761, 2023
TseFI	GTSAC	3 cut(s)	344, 430, 935
TseI	GCWGC	7 cut(s)	108, 598, 690, 1425, 1526, 2024, 2219
Tsp45I	GTSAC	3 cut(s)	344, 430, 935
TspDTI	ATGAA	8 cut(s)	327, 540, 636, 1086, 1363, 1437, 1674, 2144
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	4 cut(s)	841, 1570, 1761, 2023
Van91I	CCANNNNNTGG	1 cut(s)	741
VneI	GTGCAC	2 cut(s)	1339, 1534
VpaK11BI	GGWCC	2 cut(s)	324, 896
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	4 cut(s)	535, 1648, 2276, 2318
XbaI	TCTAGA	2 cut(s)	748, 1676
XceI	RCATGY	2 cut(s)	520, 1985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XhoI	CTCGAG	1 cut(s)	1830
XmiI	GTMKAC	2 cut(s)	780, 1723
XspI	CTAG	6 cut(s)	749, 1292, 1493, 1677, 2076, 2151
Zsp2I	ATGCAT	1 cut(s)	1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.