RchiOBHm_Chr1g0348771

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
41757673 .. 41758780
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57477

Sequence Viewer

Length: 267 bp
ATGGCAGCATACTTTGTGACATTGACTGTGTGTCTTGGCCTTTGGTGTGGCAGAATATACTTGCTTGACATACTTTCTCCATCAAATGGTATGGCAGAATATTACTTATGCAACAGTTTCTTCTGGAGATCAGACATATATAAGTCATCCATGGAAGAGAGGAGGAAATTGCAGATACCATGCCTAGAATTAAGACTGCCAAGAATTGTTCTTTTCACAGAATTGAATTTGTATATTAATTTTAATTTGTTTTGTTTTTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.55

Weight (kDa)

7.58

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AcsI RAATTY 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 226
AhdI GACNNNNNGTC 1 cut(s) 30
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 226
AseI ATTAAT 1 cut(s) 237
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 88
BfaI CTAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmeRI GACNNNNNGTC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 150
BspANI GGCC 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 28, 116
Bst6I CTCTTC 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 146
CviAII CATG 2 cut(s) 151, 180
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 150
Eam1105I GACNNNNNGTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 154, 183
FatI CATG 2 cut(s) 150, 179
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 185
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 39
Hin1II CATG 2 cut(s) 154, 183
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 28, 116
HpyCH4V TGCA 2 cut(s) 111, 172
Hsp92II CATG 2 cut(s) 154, 183
Kzo9I GATC 1 cut(s) 128
LpnPI CCDG 1 cut(s) 109
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 2 cut(s) 112, 167
MluCI AATT 7 cut(s) 167, 188, 204, 221, 226, 238, 244
MnlI CCTC 2 cut(s) 153, 156
MseI TTAA 4 cut(s) 191, 237, 243, 265
NcoI CCATGG 1 cut(s) 150
NdeII GATC 1 cut(s) 128
NlaIII CATG 2 cut(s) 154, 183
NmuCI GTSAC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 237
SaqAI TTAA 4 cut(s) 191, 237, 243, 265
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 128
SgeI CNNG 8 cut(s) 47, 73, 77, 136, 163, 192, 197, 213
Sse9I AATT 7 cut(s) 167, 188, 204, 221, 226, 238, 244
SspI AATATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 28, 116
TasI AATT 7 cut(s) 167, 188, 204, 221, 226, 238, 244
Tru1I TTAA 4 cut(s) 191, 237, 243, 265
Tru9I TTAA 4 cut(s) 191, 237, 243, 265
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 86
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 1 cut(s) 226
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.