Rh5CG339000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
38783056 .. 38802870
19815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG339000.1

Sequence Viewer

Length: 321 bp
ATGTGTACGTTGTTCATCACGTACTATCGGCTTCTTCCATGTTGGGGTATCCAAGATCTTCTGGTATCTGACCGCCCATATATTCTGTTCAGAAACATATTTCAGTTCTATGCAAGCAGTACATGTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTACATATCTTGGCCTTTGGTGTGGCAGAATATTACTTGCTTGACATACTTTCTCCACCAAATGGTATGGCAGAATATTACTTTGCTTGACAGTTTCTTCTGGATATCAGACATATATAAGATTTTATATTCATCAATTGTAACTATGAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.74

Weight (kDa)

4.94

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AciI CCGC 1 cut(s) 73
AfaI GTAC 3 cut(s) 7, 23, 121
AfiI CCNNNNNNNGG 2 cut(s) 44, 226
AflIII ACRYGT 1 cut(s) 122
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 156
BciVI GTATCC 1 cut(s) 59
BfuI GTATCC 1 cut(s) 59
BglII AGATCT 1 cut(s) 55
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 226
BseLI CCNNNNNNNGG 2 cut(s) 44, 226
BseXI GCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 44, 226
BsnI GGCC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 178
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 115, 130
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 115, 130
Csp6I GTAC 3 cut(s) 6, 22, 120
CviAII CATG 2 cut(s) 39, 123
CviJI RGCY 2 cut(s) 31, 178
CviKI_1 RGCY 2 cut(s) 31, 178
CviQI GTAC 3 cut(s) 6, 22, 120
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 270
EcoRV GATATC 1 cut(s) 270
FaeI CATG 2 cut(s) 42, 126
FatI CATG 2 cut(s) 38, 122
Fnu4HI GCNGC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 2 cut(s) 42, 126
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 70, 92, 274
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 2 cut(s) 8, 20
HpyCH4V TGCA 2 cut(s) 113, 128
HpySE526I ACGT 2 cut(s) 8, 20
Hsp92II CATG 2 cut(s) 42, 126
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 47, 114, 250
Lsp1109I GCAGC 1 cut(s) 156
MaeII ACGT 2 cut(s) 8, 20
MaeIII GTNAC 2 cut(s) 155, 304
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 26, 50, 253
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 300
MunI CAATTG 1 cut(s) 300
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 42, 126
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 126
PciI ACATGT 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 21
PscI ACATGT 1 cut(s) 122
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 3 cut(s) 7, 23, 121
RsaNI GTAC 3 cut(s) 6, 22, 120
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 1 cut(s) 55
SetI ASST 2 cut(s) 11, 23
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 73
SspI AATATT 2 cut(s) 196, 241
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 2 cut(s) 11, 23
TasI AATT 1 cut(s) 300
TatI WGTACW 1 cut(s) 119
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 4, 285
Van91I CCANNNNNTGG 1 cut(s) 226
XceI RCATGY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.