RchiOBHm_Chr7g0243031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016435
Physical Location & Seq
Reverse (-)
69334834 .. 69335076
243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21780

Sequence Viewer

Length: 243 bp
ATGGAATGGGCTGGATCAGGCTGGGCCGGCCGTTTGCCACCTCTAGAAGAAACCCACACCGACAGTACCCACCGAAACCCCACAAGTTCTACCTATTTACGACGCTTGGCGCTGGGTCCTTCTCTAGCTCCAACTCCGGCACCCAGACCCGGCGGTGATGAAGTTCCTTTTCCGGTCGAGGAGGAGAAGAAAGCAATTCCGGTTGTTAAGGCAGCTGCTAAGCCCAGAAGAGGTATGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.67

Weight (kDa)

9.39

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 28
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 149, 230
AluBI AGCT 2 cut(s) 128, 215
AluI AGCT 2 cut(s) 128, 215
AlwI GGATC 1 cut(s) 22
AoxI GGCC 2 cut(s) 24, 28
ApeKI GCWGC 2 cut(s) 212, 215
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 24, 116
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 202, 224
BceAI ACGGC 1 cut(s) 15
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 44, 125
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 2 cut(s) 213, 216
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 2 cut(s) 214, 217
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 24, 116
BmiI GGNNCC 2 cut(s) 117, 141
BmrFI CCNGG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 150
BsaWI WCCGGW 2 cut(s) 172, 199
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 230
Bse118I RCCGGY 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 149, 230
BseRI GAGGAG 2 cut(s) 194, 197
BseX3I CGGCCG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 202, 224
BseYI CCCAGC 2 cut(s) 21, 112
Bsh1285I CGRYCG 2 cut(s) 31, 177
BshFI GGCC 2 cut(s) 26, 30
BshNI GGYRCC 1 cut(s) 139
BsiEI CGRYCG 2 cut(s) 31, 177
BsiSI CCGG 5 cut(s) 27, 137, 150, 173, 200
BslI CCNNNNNNNGG 2 cut(s) 149, 230
BsnI GGCC 2 cut(s) 26, 30
Bsp143I GATC 1 cut(s) 14
Bsp1720I GCTNAGC 1 cut(s) 219
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 26, 30
BspLI GGNNCC 2 cut(s) 117, 141
BspPI GGATC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMCI CGRYCG 2 cut(s) 31, 177
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 202, 224
BstZI CGGCCG 1 cut(s) 28
BsuRI GGCC 2 cut(s) 26, 30
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 24, 116
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 7 cut(s) 11, 21, 26, 30, 128, 215, 223
CviKI_1 RGCY 7 cut(s) 11, 21, 26, 30, 128, 215, 223
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 28
EagI CGGCCG 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 116
Eco52I CGGCCG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 116
FaiI YATR 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 213, 216
FseI GGCCGGCC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 213, 216
FspBI CTAG 2 cut(s) 44, 125
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 213, 216
GsaI CCCAGC 2 cut(s) 25, 116
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 2 cut(s) 26, 30
HapII CCGG 5 cut(s) 27, 137, 150, 173, 200
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HpaII CCGG 5 cut(s) 27, 137, 150, 173, 200
HphI GGTGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 219
HspAI GCGC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 2 cut(s) 202, 224
MaeI CTAG 2 cut(s) 44, 125
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 3 cut(s) 59, 199, 240
MluCI AATT 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 4 cut(s) 51, 172, 175, 224
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 5 cut(s) 27, 137, 150, 173, 200
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 27
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 14
NgoMIV GCCGGC 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 117, 141
PdiI GCCGGC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 214, 217
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
PspFI CCCAGC 2 cut(s) 21, 112
PspN4I GGNNCC 2 cut(s) 117, 141
PspPI GGNCC 2 cut(s) 24, 116
PspPPI RGGWCCY 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 215
RigI GGCCGGCC 1 cut(s) 30
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 213, 216
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 2 cut(s) 24, 116
ScrFI CCNGG 1 cut(s) 150
SetI ASST 5 cut(s) 43, 95, 130, 217, 235
SinI GGWCC 1 cut(s) 116
Sse9I AATT 1 cut(s) 195
SsiI CCGC 1 cut(s) 153
SspMI CTAG 2 cut(s) 44, 125
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 195
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 2 cut(s) 212, 215
TspDTI ATGAA 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 43
XspI CTAG 2 cut(s) 44, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.