Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016435

Physical Location & Seq

Genomic Coordinates Forward (+)

13487538 .. 13505179

Gene Structure 17642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTCACCTACTCAGTAAATTCAGTGCTCAGTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTACATATCTTGGCCTTTGGTGTGGCAGAATATTACTTGCTTGACATACTTTCTCCACCAAATGGTATGGCAGAATATTACTTTGCTTGACAGTTTCTTCCGGATATCGACGTATATAAGATTTGTAAATGAGAAAGAGGTGGTGGTTGCTGCTGTGGTAGCTACAACCGAATTTGTTGCAGATCCGCCTATGGCTTTTCATGAAAGCATAAACACTACAGATAATAACAAAGGGTTAGAATTGGAGAACAAGGAAGCTCCAAGTGCATTTGGTGATAGAGAGCCAGAAGCCAAAGCACGATTGACAAGGCTCTACACCACAAAATGCAGCTCAACTCGTCGCACGCATCTTTCGAATGATGTTGATACCGGAATCGAGGGTATATTGAACCGATTGGAGAAACAAAGAAATTTGACTCTTGGCCTTGCAAATAATGATAACAAGCATGATCGTTGTCCCGATACGTCAACCGATGCGCCGAACGACACTTACAAATTTCCCGAAAACGAGAATCATGCACCATTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

200

Amino Acids

22.78

Weight (kDa)

5.22

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016435)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0348771 RchiOBHm_Chr2g0140831 RchiOBHm_Chr4g0411461 RchiOBHm_Chr5g0081791 RchiOBHm_Chr7g0243031
rosa_multiflora	Rmu_sc0004156.1_g000006 Rmu_sc0022366.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134700 Rroxscaffold_5G00343820
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh2BG267600 Rh2BG426500 Rh2CG317800 Rh4CG254600 Rh5CG339000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	4 cut(s)	19, 242, 481, 566
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	460
AluBI	AGCT	3 cut(s)	233, 329, 402
AluI	AGCT	3 cut(s)	233, 329, 402
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	2 cut(s)	83, 493
ApeKI	GCWGC	3 cut(s)	51, 221, 399
ApoI	RAATTY	4 cut(s)	19, 242, 481, 566
AspLEI	GCGC	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	356
AsuII	TTCGAA	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	63, 208, 411
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 569, 603
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	3 cut(s)	52, 222, 400
BlsI	GCNGC	3 cut(s)	53, 223, 401
BmsI	GCATC	2 cut(s)	427, 535
Bpu14I	TTCGAA	1 cut(s)	425
BsaWI	WCCGGW	2 cut(s)	171, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseAI	TCCGGA	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	27, 43
BseXI	GCAGC	3 cut(s)	63, 208, 411
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	85, 495
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	172, 441
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	85, 495
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	253, 520
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	85, 495
BspCNI	CTCAG	2 cut(s)	26, 42
BspEI	TCCGGA	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	271
BspPI	GGATC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	425
BssMI	GATC	2 cut(s)	253, 520
Bst4CI	ACNGT	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	37, 416
BstDEI	CTNAG	2 cut(s)	13, 29
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	2 cut(s)	256, 523
BstMBI	GATC	2 cut(s)	253, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 335, 596
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	63, 208, 411
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	85, 495
BtsIMutI	CAGTG	2 cut(s)	30, 37
Cac8I	GCNNGC	2 cut(s)	37, 416
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	550
CviAII	CATG	3 cut(s)	272, 518, 587
CviJI	RGCY	9 cut(s)	85, 233, 266, 329, 355, 362, 382, 402, 495
CviKI_1	RGCY	9 cut(s)	85, 233, 266, 329, 355, 362, 382, 402, 495
DdeI	CTNAG	2 cut(s)	13, 29
DpnI	GATC	2 cut(s)	255, 522
DpnII	GATC	2 cut(s)	253, 520
EciI	GGCGGA	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	177
FaeI	CATG	3 cut(s)	275, 521, 590
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	3 cut(s)	271, 517, 586
Fnu4HI	GCNGC	3 cut(s)	52, 222, 400
Fsp4HI	GCNGC	3 cut(s)	52, 222, 400
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	3 cut(s)	52, 222, 400
HaeIII	GGCC	2 cut(s)	85, 495
HapII	CCGG	2 cut(s)	172, 441
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	275, 521, 590
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	3 cut(s)	444, 487, 583
HpaII	CCGG	2 cut(s)	172, 441
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	6, 540
Hpy188III	TCNNGA	4 cut(s)	172, 272, 530, 572
Hpy8I	GTNNAC	2 cut(s)	6, 540
Hpy99I	CGWCG	2 cut(s)	184, 414
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	182, 536
HpyCH4V	TGCA	6 cut(s)	35, 251, 338, 399, 500, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 335, 596
HpyF3I	CTNAG	2 cut(s)	13, 29
HpySE526I	ACGT	2 cut(s)	182, 536
Hsp92II	CATG	3 cut(s)	275, 521, 590
HspAI	GCGC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	253, 520
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	4 cut(s)	21, 185, 369, 454
Lsp1109I	GCAGC	3 cut(s)	63, 208, 411
LweI	GCATC	2 cut(s)	427, 535
MaeII	ACGT	2 cut(s)	182, 536
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	255, 522
MboI	GATC	2 cut(s)	253, 520
MboII	GAAGA	1 cut(s)	160
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	5 cut(s)	19, 242, 311, 481, 566
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	2 cut(s)	202, 442
MroI	TCCGGA	1 cut(s)	171
MseI	TTAA	1 cut(s)	601
MspI	CCGG	2 cut(s)	172, 441
MwoI	GCNNNNNNNGC	3 cut(s)	230, 335, 596
NdeII	GATC	2 cut(s)	253, 520
NlaIII	CATG	3 cut(s)	275, 521, 590
NmuCI	GTSAC	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	425
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	444, 583
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	53, 223, 401
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PsrI	GAACNNNNNNTAC	2 cut(s)	545, 577
PsuI	RGATCY	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	601
SatI	GCNGC	3 cut(s)	52, 222, 400
Sau3AI	GATC	2 cut(s)	253, 520
SchI	GAGTC	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	7 cut(s)	11, 185, 213, 235, 331, 404, 539
SfaNI	GCATC	2 cut(s)	427, 535
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	425
Sse9I	AATT	5 cut(s)	19, 242, 311, 481, 566
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	2 cut(s)	103, 148
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	185, 539
TaqI	TCGA	3 cut(s)	179, 425, 447
TasI	AATT	5 cut(s)	19, 242, 311, 481, 566
TfiI	GAWTC	2 cut(s)	444, 583
Tru1I	TTAA	1 cut(s)	601
Tru9I	TTAA	1 cut(s)	601
TscAI	CASTG	2 cut(s)	30, 37
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	3 cut(s)	51, 221, 399
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	260, 288
TspRI	CASTG	2 cut(s)	30, 37
Van91I	CCANNNNNTGG	1 cut(s)	133
XapI	RAATTY	4 cut(s)	19, 242, 481, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.