histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0348771 RchiOBHm_Chr2g0140831 RchiOBHm_Chr4g0411461 RchiOBHm_Chr5g0081791 RchiOBHm_Chr7g0243031 |
| rosa_multiflora | Rmu_sc0004156.1_g000006 Rmu_sc0022366.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00134700 Rroxscaffold_5G00343820 |
| rosa_rugosa | Rorug05G0278500 |
| rosa_samantha | Rh2BG267600 Rh2BG426500 Rh2CG317800 Rh4CG254600 Rh5CG339000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AdeI | CACNNNGTG | 1 cut(s) | 211 |
| AfaI | GTAC | 2 cut(s) | 62, 91 |
| AgsI | TTSAA | 2 cut(s) | 32, 133 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 184, 216 |
| AluBI | AGCT | 1 cut(s) | 79 |
| AluI | AGCT | 1 cut(s) | 79 |
| ApeKI | GCWGC | 1 cut(s) | 187 |
| BbvI | GCAGC | 1 cut(s) | 174 |
| BclI | TGATCA | 1 cut(s) | 19 |
| BfaI | CTAG | 1 cut(s) | 176 |
| BisI | GCNGC | 1 cut(s) | 188 |
| BlsI | GCNGC | 1 cut(s) | 189 |
| BmcAI | AGTACT | 2 cut(s) | 62, 91 |
| BpuEI | CTTGAG | 3 cut(s) | 85, 90, 103 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseGI | GGATG | 1 cut(s) | 137 |
| BseRI | GAGGAG | 1 cut(s) | 161 |
| BseXI | GCAGC | 1 cut(s) | 174 |
| Bsp143I | GATC | 1 cut(s) | 19 |
| Bsp19I | CCATGG | 1 cut(s) | 141 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 1 cut(s) | 19 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst6I | CTCTTC | 1 cut(s) | 146 |
| BstDSI | CCRYGG | 1 cut(s) | 141 |
| BstF5I | GGATG | 1 cut(s) | 137 |
| BstKTI | GATC | 1 cut(s) | 22 |
| BstMBI | GATC | 1 cut(s) | 19 |
| BstV1I | GCAGC | 1 cut(s) | 174 |
| BtgI | CCRYGG | 1 cut(s) | 141 |
| BtsCI | GGATG | 1 cut(s) | 137 |
| Csp6I | GTAC | 2 cut(s) | 61, 90 |
| CviAII | CATG | 3 cut(s) | 97, 142, 171 |
| CviJI | RGCY | 2 cut(s) | 79, 187 |
| CviKI_1 | RGCY | 2 cut(s) | 79, 187 |
| CviQI | GTAC | 2 cut(s) | 61, 90 |
| DpnI | GATC | 1 cut(s) | 21 |
| DpnII | GATC | 1 cut(s) | 19 |
| DraIII | CACNNNGTG | 1 cut(s) | 211 |
| Eam1104I | CTCTTC | 1 cut(s) | 146 |
| EarI | CTCTTC | 1 cut(s) | 146 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco32I | GATATC | 1 cut(s) | 168 |
| EcoRV | GATATC | 1 cut(s) | 168 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 3 cut(s) | 100, 145, 174 |
| FaiI | YATR | 4 cut(s) | 98, 119, 143, 172 |
| FatI | CATG | 3 cut(s) | 96, 141, 170 |
| FbaI | TGATCA | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 1 cut(s) | 188 |
| FokI | GGATG | 1 cut(s) | 124 |
| Fsp4HI | GCNGC | 1 cut(s) | 188 |
| FspBI | CTAG | 1 cut(s) | 176 |
| GluI | GCNGC | 1 cut(s) | 188 |
| Hin1II | CATG | 3 cut(s) | 100, 145, 174 |
| HinfI | GANTC | 2 cut(s) | 12, 103 |
| Hpy166II | GTNNAC | 1 cut(s) | 102 |
| Hpy188I | TCNGA | 1 cut(s) | 24 |
| Hpy188III | TCNNGA | 2 cut(s) | 82, 107 |
| Hpy8I | GTNNAC | 1 cut(s) | 102 |
| HpyCH4V | TGCA | 1 cut(s) | 163 |
| Hsp92II | CATG | 3 cut(s) | 100, 145, 174 |
| Ksp22I | TGATCA | 1 cut(s) | 19 |
| Kzo9I | GATC | 1 cut(s) | 19 |
| LpnPI | CCDG | 1 cut(s) | 126 |
| Lsp1109I | GCAGC | 1 cut(s) | 174 |
| MaeI | CTAG | 1 cut(s) | 176 |
| MalI | GATC | 1 cut(s) | 21 |
| MboI | GATC | 1 cut(s) | 19 |
| MboII | GAAGA | 1 cut(s) | 163 |
| MluCI | AATT | 3 cut(s) | 158, 179, 192 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MnlI | CCTC | 3 cut(s) | 18, 139, 147 |
| MseI | TTAA | 1 cut(s) | 182 |
| NcoI | CCATGG | 1 cut(s) | 141 |
| NdeII | GATC | 1 cut(s) | 19 |
| NlaIII | CATG | 3 cut(s) | 100, 145, 174 |
| PfeI | GAWTC | 1 cut(s) | 12 |
| PkrI | GCNGC | 1 cut(s) | 189 |
| PleI | GAGTC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 97 |
| RsaI | GTAC | 2 cut(s) | 62, 91 |
| RsaNI | GTAC | 2 cut(s) | 61, 90 |
| SaqAI | TTAA | 1 cut(s) | 182 |
| SatI | GCNGC | 1 cut(s) | 188 |
| Sau3AI | GATC | 1 cut(s) | 19 |
| ScaI | AGTACT | 2 cut(s) | 62, 91 |
| SchI | GAGTC | 1 cut(s) | 97 |
| SetI | ASST | 3 cut(s) | 81, 115, 131 |
| SmlI | CTYRAG | 3 cut(s) | 64, 82, 105 |
| SmoI | CTYRAG | 3 cut(s) | 64, 82, 105 |
| Sse9I | AATT | 3 cut(s) | 158, 179, 192 |
| SspMI | CTAG | 1 cut(s) | 176 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TasI | AATT | 3 cut(s) | 158, 179, 192 |
| TatI | WGTACW | 2 cut(s) | 60, 89 |
| TfiI | GAWTC | 1 cut(s) | 12 |
| Tru1I | TTAA | 1 cut(s) | 182 |
| Tru9I | TTAA | 1 cut(s) | 182 |
| TseI | GCWGC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 4 cut(s) | 4, 85, 89, 134 |
| XspI | CTAG | 1 cut(s) | 176 |
| ZrmI | AGTACT | 2 cut(s) | 62, 91 |