Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016435

Physical Location & Seq

Genomic Coordinates Reverse (-)

50442506 .. 50455496

Gene Structure 12991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG254600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTCACCTCCCTCTTCTCTGCCCTGTTCATTGGAAGGTATAATTGGGATGGCCTACTAGATGGACATGAATTGGACACTGGAAGGTTTACGCATTCATTCGAAGCAACAGAGCCCTTCAGAGGTATGTCATTGAGTCCTGATGGCTCTTATCTTCTGACTAATGGAATGGACTGCAAACTCTGCATTTGGGATATGCGCCCGTATGCACCACAAAATCGTTGTGTAAAGATAATGGAAGGGCACCAACACAACTTTGAAAAGAACTTGTTGAAATGTAGCTGGTCACCTGATGGAAGCAAGGTCACGGCCGGCAGTTCTGATAGGATGGTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTATGTGTCTTGGCCTTTGGTGTGGCAGAATATACTTGCTTGACATACTTTCTCCATCAAATGGTATGGCAGAATATTACTTGTGCGACAGTTTCTTCTGGAGATCAGACATATATAAGGATATAATTGATGAATCTGGTGTGGGTCTTGTTTTGATTGGACATGGTAGCATTGATCAGGTTTGCCAAAAGAAATTATACATATACAATTATTATACTTTTTGGTTTGAAAAGCTATGTACAGTAAGATTTAGCAAGGCTCGTGAGTCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

215

Amino Acids

24.64

Weight (kDa)

6.2

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	43 - 112	7e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	44 - 111	1.8e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016435)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0348771 RchiOBHm_Chr2g0140831 RchiOBHm_Chr4g0411461 RchiOBHm_Chr5g0081791 RchiOBHm_Chr7g0243031
rosa_multiflora	Rmu_sc0004156.1_g000006 Rmu_sc0022366.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134700 Rroxscaffold_5G00343820
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh2BG267600 Rh2BG426500 Rh2CG317800 Rh4CG254600 Rh5CG339000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	122, 431
AgsI	TTSAA	3 cut(s)	260, 274, 599
AhdI	GACNNNNNGTC	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	2 cut(s)	282, 604
AluI	AGCT	2 cut(s)	282, 604
AoxI	GGCC	3 cut(s)	52, 309, 382
ApeKI	GCWGC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	279
AsuII	TTCGAA	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	6 cut(s)	44, 56, 137, 287, 322, 433
BceAI	ACGGC	1 cut(s)	324
BclI	TGATCA	1 cut(s)	544
BfaI	CTAG	3 cut(s)	59, 639, 646
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmeRI	GACNNNNNGTC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	490
Bpu14I	TTCGAA	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 431
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	55, 333
BseLI	CCNNNNNNNGG	2 cut(s)	122, 431
BseNI	ACTGG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	246
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	54, 311, 384
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	122, 431
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	54, 311, 384
Bsp119I	TTCGAA	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	117, 246
Bsp1407I	TGTACA	1 cut(s)	608
Bsp143I	GATC	2 cut(s)	473, 544
BspANI	GGCC	3 cut(s)	54, 311, 384
BspLI	GGNNCC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	311
BssMI	GATC	2 cut(s)	473, 544
BssSI	CACGAG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	461, 613
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	313, 336
BstEII	GGTNACC	2 cut(s)	4, 285
BstF5I	GGATG	2 cut(s)	55, 333
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	476, 547
BstMBI	GATC	2 cut(s)	473, 544
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstPI	GGTNACC	2 cut(s)	4, 285
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	362
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	54, 311, 384
BtsCI	GGATG	2 cut(s)	55, 333
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	313, 336
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	2 cut(s)	68, 533
CviJI	RGCY	8 cut(s)	54, 115, 147, 282, 311, 384, 604, 629
CviKI_1	RGCY	8 cut(s)	54, 115, 147, 282, 311, 384, 604, 629
CviQI	GTAC	1 cut(s)	609
DpnI	GATC	2 cut(s)	475, 546
DpnII	GATC	2 cut(s)	473, 544
DriI	GACNNNNNGTC	1 cut(s)	375
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	20
Eam1105I	GACNNNNNGTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	103
Eco91I	GGTNACC	2 cut(s)	4, 285
EcoO65I	GGTNACC	2 cut(s)	4, 285
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	2 cut(s)	71, 536
FatI	CATG	2 cut(s)	67, 532
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	2 cut(s)	62, 340
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	3 cut(s)	59, 639, 646
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	490
HaeIII	GGCC	3 cut(s)	54, 311, 384
HapII	CCGG	1 cut(s)	312
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	71, 536
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	136, 503, 635, 642
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	122, 159, 322, 478
Hpy188III	TCNNGA	4 cut(s)	140, 469, 632, 639
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	4 cut(s)	30, 78, 127, 233
HpyCH4III	ACNGT	2 cut(s)	461, 613
HpyCH4V	TGCA	4 cut(s)	177, 186, 209, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	71, 536
HspAI	GCGC	1 cut(s)	199
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	473, 544
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	3 cut(s)	59, 639, 646
MaeIII	GTNAC	4 cut(s)	4, 285, 304, 361
MalI	GATC	2 cut(s)	475, 546
MboI	GATC	2 cut(s)	473, 544
MboII	GAAGA	3 cut(s)	7, 146, 457
MhlI	GDGCHC	2 cut(s)	117, 246
MluCI	AATT	5 cut(s)	43, 71, 495, 563, 577
MlyI	GAGTC	3 cut(s)	145, 636, 644
MnlI	CCTC	3 cut(s)	19, 23, 116
MroNI	GCCGGC	1 cut(s)	311
MspI	CCGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	183
NaeI	GCCGGC	1 cut(s)	313
NdeII	GATC	2 cut(s)	473, 544
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	2 cut(s)	71, 536
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	4 cut(s)	4, 285, 304, 361
NspV	TTCGAA	1 cut(s)	102
PctI	GAATGC	1 cut(s)	94
PdiI	GCCGGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	3 cut(s)	144, 636, 643
PpsI	GAGTC	3 cut(s)	144, 636, 643
PspEI	GGTNACC	2 cut(s)	4, 285
PspN4I	GGNNCC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	473, 544
SchI	GAGTC	3 cut(s)	145, 636, 644
SduI	GDGCHC	2 cut(s)	117, 246
SetI	ASST	9 cut(s)	11, 41, 89, 127, 284, 292, 306, 552, 606
SfuI	TTCGAA	1 cut(s)	102
Sse9I	AATT	5 cut(s)	43, 71, 495, 563, 577
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	3 cut(s)	59, 639, 646
TaaI	ACNGT	2 cut(s)	461, 613
TaqI	TCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	43, 71, 495, 563, 577
TatI	WGTACW	1 cut(s)	608
TfiI	GAWTC	1 cut(s)	503
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	4 cut(s)	4, 285, 304, 361
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	4 cut(s)	4, 285, 304, 361
TspDTI	ATGAA	4 cut(s)	19, 84, 87, 516
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	431
XbaI	TCTAGA	1 cut(s)	638
XspI	CTAG	3 cut(s)	59, 639, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.