RchiOBHm_Chr5g0081791

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
87743627 .. 87746502
2876 bp
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UTR
Exon/CDS
Intron
PRQ35604

Sequence Viewer

Length: 405 bp
ATGGTAGAAGAGGTGATAACAAATGGTAGCAGCCCAAATGAGGTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTATGTGTCTTGGCCCTTGGTGTGGCAAAATATACTTGCTTGACATACTTTCTCCATCAAATGGTATGGCAGAATATTACTTGTGCGACAGTTTCTTTTGGAGATCAGACATATATAAGTCATCCATGGAGGAGAGGAGGAAATTGCAGATACCATGCCTAGAATTAAAACTGCCAAGAATTGTTATTTTCACAAAATTGAATTTGTATATTAATTTTTTTTTTAATATGAAATATTGCAGTCACCATTTGCTAGGTAGTGTGTTTTCTGGTGATGGGGCCCACAGTTTGGAAGTCACCAAAAAAGTGATAATGTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.34

Weight (kDa)

6.81

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 143, 370
AcsI RAATTY 1 cut(s) 283
AfiI CCNNNNNNNGG 4 cut(s) 40, 104, 143, 370
AgsI TTSAA 1 cut(s) 283
AhdI GACNNNNNGTC 1 cut(s) 87
AoxI GGCC 2 cut(s) 94, 360
ApaI GGGCCC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 30, 62
ApoI RAATTY 1 cut(s) 283
AseI ATTAAT 1 cut(s) 294
AspS9I GGNCC 3 cut(s) 95, 360, 361
AsuHPI GGTGA 4 cut(s) 25, 317, 365, 370
BaeGI GKGCMC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 42, 74
BccI CCATC 2 cut(s) 145, 350
BfaI CTAG 2 cut(s) 242, 335
BisI GCNGC 2 cut(s) 31, 63
BlsI GCNGC 2 cut(s) 32, 64
BmeRI GACNNNNNGTC 1 cut(s) 87
BmgT120I GGNCC 3 cut(s) 95, 360, 361
BmiI GGNNCC 2 cut(s) 361, 362
BsaJI CCNNGG 2 cut(s) 98, 207
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 104, 143, 370
BseDI CCNNGG 2 cut(s) 98, 207
BseGI GGATG 1 cut(s) 203
BseLI CCNNNNNNNGG 4 cut(s) 40, 104, 143, 370
BseRI GAGGAG 2 cut(s) 227, 232
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 2 cut(s) 42, 74
BsgI GTGCAG 1 cut(s) 65
BshFI GGCC 2 cut(s) 96, 362
BslI CCNNNNNNNGG 4 cut(s) 40, 104, 143, 370
BsnI GGCC 2 cut(s) 96, 362
Bsp120I GGGCCC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 1 cut(s) 185
Bsp19I CCATGG 1 cut(s) 207
BspANI GGCC 2 cut(s) 96, 362
BspLI GGNNCC 2 cut(s) 361, 362
BssECI CCNNGG 2 cut(s) 98, 207
BssMI GATC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 98, 207
Bst4CI ACNGT 2 cut(s) 173, 368
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 203
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 42, 74
BsuRI GGCC 2 cut(s) 96, 362
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 3 cut(s) 95, 360, 361
CviAII CATG 2 cut(s) 208, 237
CviJI RGCY 3 cut(s) 33, 96, 362
CviKI_1 RGCY 3 cut(s) 33, 96, 362
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
DriI GACNNNNNGTC 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 98, 207
Eco24I GRGCYC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 98, 207
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 2 cut(s) 98, 207
FaeI CATG 2 cut(s) 211, 240
FatI CATG 2 cut(s) 207, 236
Fnu4HI GCNGC 2 cut(s) 31, 63
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 31, 63
FspBI CTAG 2 cut(s) 242, 335
GluI GCNGC 2 cut(s) 31, 63
HaeIII GGCC 2 cut(s) 96, 362
Hin1II CATG 2 cut(s) 211, 240
HphI GGTGA 4 cut(s) 25, 317, 365, 370
Hpy188I TCNGA 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 173, 368
HpyCH4V TGCA 3 cut(s) 46, 229, 321
Hsp92II CATG 2 cut(s) 211, 240
Kzo9I GATC 1 cut(s) 185
LpnPI CCDG 2 cut(s) 32, 336
Lsp1109I GCAGC 2 cut(s) 42, 74
MaeI CTAG 2 cut(s) 242, 335
MaeIII GTNAC 3 cut(s) 73, 323, 376
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 6 cut(s) 224, 245, 261, 278, 283, 295
MnlI CCTC 5 cut(s) 4, 34, 205, 210, 213
MseI TTAA 3 cut(s) 248, 294, 306
NcoI CCATGG 1 cut(s) 207
NdeII GATC 1 cut(s) 185
NlaIII CATG 2 cut(s) 211, 240
NlaIV GGNNCC 2 cut(s) 361, 362
NmuCI GTSAC 3 cut(s) 73, 323, 376
PflMI CCANNNNNTGG 2 cut(s) 143, 370
PkrI GCNGC 2 cut(s) 32, 64
PshBI ATTAAT 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 361, 362
PspOMI GGGCCC 1 cut(s) 360
PspPI GGNCC 3 cut(s) 95, 360, 361
SaqAI TTAA 3 cut(s) 248, 294, 306
SatI GCNGC 2 cut(s) 31, 63
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 3 cut(s) 95, 360, 361
SduI GDGCHC 1 cut(s) 364
SetI ASST 3 cut(s) 15, 45, 340
Sse9I AATT 6 cut(s) 224, 245, 261, 278, 283, 295
SspI AATATT 2 cut(s) 158, 317
SspMI CTAG 2 cut(s) 242, 335
StyI CCWWGG 2 cut(s) 98, 207
TaaI ACNGT 2 cut(s) 173, 368
TasI AATT 6 cut(s) 224, 245, 261, 278, 283, 295
Tru1I TTAA 3 cut(s) 248, 294, 306
Tru9I TTAA 3 cut(s) 248, 294, 306
TseFI GTSAC 3 cut(s) 73, 323, 376
TseI GCWGC 2 cut(s) 30, 62
Tsp45I GTSAC 3 cut(s) 73, 323, 376
TspDTI ATGAA 1 cut(s) 326
Van91I CCANNNNNTGG 2 cut(s) 143, 370
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 283
XspI CTAG 2 cut(s) 242, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.