Rorug05G0278500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004531
Physical Location & Seq
Forward (+)
31627341 .. 31631939
4599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0278500.1

Sequence Viewer

Length: 1353 bp
ATGATAGTAATCATTACCAAGGAGTCTCCTCTGACAGAAAATAGGGACCAGGGAGCCGGAGATTCTGACTTGGTTAGGTCACCTCGTACTGGAAGAGCAAGGAATATCAGCTCAGAGAAGTTACAAGATGATTCAATTACGTCTTCCATTCATGAAATAGAAAAGGAAGCTACTGATATACAAACATGGCAGTCATTATCTTCTCCTAAATCCCACTGGTTAAATAATGAACCTAACGAAGATGACTCCTCGGGTGAGAACAGAATACGAGGAGTACCCCAGTCTGACCTTCAATTTCTTGGAAGATCAGCCGGAGGATCAATTTCTCCTGTGACTAGGAGACAAATGTCAATTTCAACTGAAGGGTCTCCTTTGCCACTTCACTCTCTCCATGACCGTAAGCATATATCTTCTCAGCAAGGTTCTCCAGACCCATCATATGAACCTCAATCTCATAGACAGAGAATTTCTTCACCTCAAAGGTCTGACATGCATACAGGAGTTTTCCCTGGTCATTTATCTCCTGTGAGGCAAACCTCTGTTTCTAGACATGACATTCGGCAAACCTCTGTTTCTAGACATGACATTCGGCAAGAGCCCCTGCAAGACAGTTTTGCAGTGAAGCACATATCTGCATCCCTAAAGTCCCATCACTCGCATCCAAAGTATCGGAAAAGGGACAGATCAGAGTCACGATCACCCACTCAGCATAGAGATTCACCCACTCGGCGTAGAGATTCACCCACTAGGCAGAGAGGTTCACCGTCTCGGCACAGAGGTTCTCCTACTGGTCATAGAGATTCACGAATACGGCATAGAGATTCAACCACTCGGCATAGAGATTCTTATGCCTACCAGAGAGATTATCGTGATAGATTTCGATCAAGGTCCCCATATTCAAAATCCCATCATAGATCAAGGTCCCCTTATTCAAGAGCCCATTATAGATCAAGATCCCCTTATTCAAGAGACCATCATAGATCGACAAGGCGAAGGCAATCTCCAAGGCGCAGGTCCCCTTTTCCTGAATATCATAATTATCATCGCCGGTCTCCTAGAAGGACACCTTGGTCACCACCTCCTAATAGGAAAACTGGATTAGGGAGACCTGGTAGAAATTTATTTGTTGCAGGTTTCAGCTTCTTAACTACAGAGAGAGATTTGGAAAGGAAGTTCTCTAGGTTTGGCCGAGTACAAGATGTTCGTATTGTTAGAGACAAGAGGTCCGGAGATTCACGTGGATTTGGGTTTTTGACCTTGGAAAGTGATGAAGACGCTGATGCGGCAATCAGGGCTCTAGATGAGACTGAGTGGAATGGTCGGATTATTCTCGTGGAAAAATCGAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

450

Amino Acids

52.1

Weight (kDa)

11.14

Isoelectric Point (pI)

99.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 374 - 443 5.4e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1069
Acc36I ACCTGC 2 cut(s) 1002, 1121
AccIII TCCGGA 1 cut(s) 1226
AciI CCGC 1 cut(s) 1283
AclWI GGATC 2 cut(s) 325, 948
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 2 cut(s) 465, 1117
AcuI CTGAAG 1 cut(s) 381
AcvI CACGTG 1 cut(s) 1238
AfaI GTAC 3 cut(s) 88, 276, 1194
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 7 cut(s) 135, 293, 357, 825, 900, 933, 966
AhdI GACNNNNNGTC 1 cut(s) 1222
AjnI CCWGG 3 cut(s) 48, 508, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 1051, 1083
AloI GAACNNNNNNTCC 2 cut(s) 1157, 1189
AluBI AGCT 3 cut(s) 111, 170, 1140
AluI AGCT 3 cut(s) 111, 170, 1140
Alw26I GTCTC 9 cut(s) 30, 334, 372, 771, 963, 1056, 1099, 1209, 1298
AlwI GGATC 2 cut(s) 325, 948
Ama87I CYCGRG 1 cut(s) 250
Aor13HI TCCGGA 1 cut(s) 1226
AoxI GGCC 1 cut(s) 1186
ApoI RAATTY 2 cut(s) 465, 1117
ArsI GACNNNNNNTTYG 4 cut(s) 540, 570, 572, 602
Asp700I GAANNNNTTC 1 cut(s) 469
AspLEI GCGC 1 cut(s) 1011
AspS9I GGNCC 5 cut(s) 46, 888, 921, 1014, 1224
AsuHPI GGTGA 8 cut(s) 72, 266, 465, 690, 711, 732, 753, 1065
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 5 cut(s) 46, 888, 921, 1014, 1224
BanII GRGCYC 3 cut(s) 600, 940, 1297
BauI CACGAG 1 cut(s) 1331
BbrPI CACGTG 1 cut(s) 1238
BbsI GAAGAC 2 cut(s) 135, 1278
BccI CCATC 4 cut(s) 442, 657, 915, 981
BceAI ACGGC 1 cut(s) 827
BciT130I CCWGG 3 cut(s) 50, 510, 1110
BcoDI GTCTC 9 cut(s) 30, 334, 372, 771, 963, 1056, 1099, 1209, 1298
BfaI CTAG 7 cut(s) 336, 546, 576, 747, 1056, 1179, 1298
BfmI CTRYAG 1 cut(s) 1149
BfuAI ACCTGC 2 cut(s) 1002, 1121
BisI GCNGC 1 cut(s) 1284
BlsI GCNGC 1 cut(s) 1285
Bme1390I CCNGG 3 cut(s) 50, 510, 1110
Bme18I GGWCC 5 cut(s) 46, 888, 921, 1014, 1224
BmeRI GACNNNNNGTC 1 cut(s) 1222
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 5 cut(s) 46, 888, 921, 1014, 1224
BmiI GGNNCC 5 cut(s) 47, 55, 890, 923, 1016
BmrFI CCNGG 3 cut(s) 50, 510, 1110
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 3 cut(s) 644, 667, 1270
BmuI ACTGGG 1 cut(s) 274
BoxI GACNNNNGTC 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 135, 1278
BpmI CTGGAG 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 1238
BsaBI GATNNNNATC 3 cut(s) 8, 880, 952
BsaI GGTCTC 4 cut(s) 372, 963, 1056, 1099
BsaJI CCNNGG 7 cut(s) 18, 49, 249, 508, 1004, 1067, 1257
BsaWI WCCGGW 1 cut(s) 1226
BsaXI ACNNNNNCTCC 2 cut(s) 1096, 1126
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 1047
Bse1I ACTGG 5 cut(s) 94, 221, 280, 793, 1099
Bse8I GATNNNNATC 3 cut(s) 8, 880, 952
BseAI TCCGGA 1 cut(s) 1226
BseBI CCWGG 3 cut(s) 50, 510, 1110
BseDI CCNNGG 7 cut(s) 18, 49, 249, 508, 1004, 1067, 1257
BseGI GGATG 2 cut(s) 635, 658
BseJI GATNNNNATC 3 cut(s) 8, 880, 952
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 4 cut(s) 126, 428, 719, 1299
BseNI ACTGG 5 cut(s) 94, 221, 280, 793, 1099
BseRI GAGGAG 3 cut(s) 18, 238, 285
BshFI GGCC 1 cut(s) 1188
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 4 cut(s) 57, 312, 1048, 1227
BslFI GGGAC 6 cut(s) 59, 631, 692, 874, 907, 1000
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 9 cut(s) 30, 334, 372, 771, 963, 1056, 1099, 1209, 1298
BsmBI CGTCTC 1 cut(s) 771
BsmFI GGGAC 6 cut(s) 59, 631, 692, 874, 907, 1000
BsnI GGCC 1 cut(s) 1188
Bso31I GGTCTC 4 cut(s) 372, 963, 1056, 1099
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 3 cut(s) 600, 940, 1297
Bsp13I TCCGGA 1 cut(s) 1226
Bsp143I GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
BspACI CCGC 1 cut(s) 1283
BspANI GGCC 1 cut(s) 1188
BspCNI CTCAG 4 cut(s) 125, 427, 718, 1300
BspEI TCCGGA 1 cut(s) 1226
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 5 cut(s) 47, 55, 890, 923, 1016
BspMI ACCTGC 2 cut(s) 1002, 1121
BspPI GGATC 2 cut(s) 325, 948
BspQI GCTCTTC 1 cut(s) 88
BspTNI GGTCTC 4 cut(s) 372, 963, 1056, 1099
BsrFI RCCGGY 1 cut(s) 1047
BsrI ACTGG 5 cut(s) 94, 221, 280, 793, 1099
BssAI RCCGGY 1 cut(s) 1047
BssECI CCNNGG 7 cut(s) 18, 49, 249, 508, 1004, 1067, 1257
BssMI GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
BssSI CACGAG 1 cut(s) 1331
BssT1I CCWWGG 4 cut(s) 18, 1004, 1067, 1257
Bst2BI CACGAG 1 cut(s) 1331
Bst2UI CCWGG 3 cut(s) 50, 510, 1110
Bst4CI ACNGT 3 cut(s) 398, 611, 765
Bst6I CTCTTC 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 1238
BstDEI CTNAG 4 cut(s) 112, 414, 705, 1308
BstEII GGTNACC 2 cut(s) 78, 1071
BstF5I GGATG 2 cut(s) 635, 658
BstHHI GCGC 1 cut(s) 1011
BstKTI GATC 9 cut(s) 308, 320, 686, 698, 884, 917, 950, 956, 983
BstMAI GTCTC 9 cut(s) 30, 334, 372, 771, 963, 1056, 1099, 1209, 1298
BstMBI GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
BstMWI GCNNNNNNNGC 2 cut(s) 1283, 1292
BstNI CCWGG 3 cut(s) 50, 510, 1110
BstNSI RCATGY 1 cut(s) 493
BstPAI GACNNNNGTC 1 cut(s) 346
BstPI GGTNACC 2 cut(s) 78, 1071
BstSCI CCNGG 3 cut(s) 48, 508, 1108
BstSFI CTRYAG 1 cut(s) 1149
BstV2I GAAGAC 2 cut(s) 135, 1278
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
BsuRI GGCC 1 cut(s) 1188
BtgZI GCGATG 1 cut(s) 1028
BtsCI GGATG 2 cut(s) 635, 658
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 214, 624
BveI ACCTGC 2 cut(s) 1002, 1121
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 1011
Cfr10I RCCGGY 1 cut(s) 1047
Cfr13I GGNCC 5 cut(s) 46, 888, 921, 1014, 1224
CseI GACGC 1 cut(s) 1283
CsiI ACCWGGT 1 cut(s) 1108
Csp6I GTAC 3 cut(s) 87, 275, 1193
CviAII CATG 6 cut(s) 152, 186, 392, 490, 551, 581
CviJI RGCY 9 cut(s) 56, 111, 170, 311, 598, 938, 1140, 1188, 1295
CviKI_1 RGCY 9 cut(s) 56, 111, 170, 311, 598, 938, 1140, 1188, 1295
CviQI GTAC 3 cut(s) 87, 275, 1193
DdeI CTNAG 4 cut(s) 112, 414, 705, 1308
DpnI GATC 9 cut(s) 307, 319, 685, 697, 883, 916, 949, 955, 982
DpnII GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
DrdI GACNNNNNNGTC 1 cut(s) 1069
DriI GACNNNNNGTC 1 cut(s) 1222
DseDI GACNNNNNNGTC 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 1186
Eam1104I CTCTTC 1 cut(s) 88
Eam1105I GACNNNNNGTC 1 cut(s) 1222
EarI CTCTTC 1 cut(s) 88
Eco130I CCWWGG 4 cut(s) 18, 1004, 1067, 1257
Eco24I GRGCYC 3 cut(s) 600, 940, 1297
Eco31I GGTCTC 4 cut(s) 372, 963, 1056, 1099
Eco47I GGWCC 5 cut(s) 46, 888, 921, 1014, 1224
Eco57I CTGAAG 1 cut(s) 381
Eco72I CACGTG 1 cut(s) 1238
Eco88I CYCGRG 1 cut(s) 250
Eco91I GGTNACC 2 cut(s) 78, 1071
EcoO109I RGGNCCY 3 cut(s) 888, 921, 1014
EcoO65I GGTNACC 2 cut(s) 78, 1071
EcoRII CCWGG 3 cut(s) 48, 508, 1108
EcoT14I CCWWGG 4 cut(s) 18, 1004, 1067, 1257
EcoT22I ATGCAT 1 cut(s) 495
EcoT38I GRGCYC 3 cut(s) 600, 940, 1297
ErhI CCWWGG 4 cut(s) 18, 1004, 1067, 1257
Esp3I CGTCTC 1 cut(s) 771
FaeI CATG 6 cut(s) 155, 189, 395, 493, 554, 584
FalI AAGNNNNNCTT 6 cut(s) 910, 942, 943, 975, 1051, 1083
FaqI GGGAC 6 cut(s) 59, 631, 692, 874, 907, 1000
FatI CATG 6 cut(s) 151, 185, 391, 489, 550, 580
FauNDI CATATG 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 1284
FokI GGATG 2 cut(s) 622, 645
FriOI GRGCYC 3 cut(s) 600, 940, 1297
Fsp4HI GCNGC 1 cut(s) 1284
FspBI CTAG 7 cut(s) 336, 546, 576, 747, 1056, 1179, 1298
GlaI GCGC 1 cut(s) 1010
GluI GCNGC 1 cut(s) 1284
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 1188
HapII CCGG 4 cut(s) 57, 312, 1048, 1227
HgaI GACGC 1 cut(s) 1283
HhaI GCGC 1 cut(s) 1011
Hin1II CATG 6 cut(s) 155, 189, 395, 493, 554, 584
Hin6I GCGC 1 cut(s) 1009
HinP1I GCGC 1 cut(s) 1009
HpaII CCGG 4 cut(s) 57, 312, 1048, 1227
HphI GGTGA 8 cut(s) 72, 266, 465, 690, 711, 732, 753, 1065
Hpy166II GTNNAC 1 cut(s) 761
Hpy188I TCNGA 8 cut(s) 33, 67, 115, 286, 487, 672, 688, 1323
Hpy8I GTNNAC 1 cut(s) 761
HpyAV CCTTC 4 cut(s) 299, 356, 987, 1053
HpyCH4III ACNGT 3 cut(s) 398, 611, 765
HpyCH4IV ACGT 2 cut(s) 140, 1237
HpyCH4V TGCA 5 cut(s) 493, 604, 617, 635, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 1283, 1292
HpyF3I CTNAG 4 cut(s) 112, 414, 705, 1308
HpySE526I ACGT 2 cut(s) 140, 1237
Hsp92II CATG 6 cut(s) 155, 189, 395, 493, 554, 584
HspAI GCGC 1 cut(s) 1009
Kpn2I TCCGGA 1 cut(s) 1226
Kzo9I GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 53
LweI GCATC 3 cut(s) 644, 667, 1270
MabI ACCWGGT 1 cut(s) 1108
MaeI CTAG 7 cut(s) 336, 546, 576, 747, 1056, 1179, 1298
MaeII ACGT 2 cut(s) 140, 1237
MaeIII GTNAC 5 cut(s) 78, 120, 331, 690, 1071
MalI GATC 9 cut(s) 307, 319, 685, 697, 883, 916, 949, 955, 982
MboI GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
MboII GAAGA 8 cut(s) 105, 135, 192, 251, 315, 402, 462, 1283
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 3 cut(s) 600, 940, 1297
MluCI AATT 7 cut(s) 135, 293, 321, 351, 465, 1036, 1117
MlyI GAGTC 3 cut(s) 32, 239, 698
MmeI TCCRAC 1 cut(s) 1301
Mph1103I ATGCAT 1 cut(s) 495
MroI TCCGGA 1 cut(s) 1226
MroXI GAANNNNTTC 1 cut(s) 469
MseI TTAA 2 cut(s) 221, 1145
MspI CCGG 4 cut(s) 57, 312, 1048, 1227
MspR9I CCNGG 3 cut(s) 50, 510, 1110
MvaI CCWGG 3 cut(s) 50, 510, 1110
MwoI GCNNNNNNNGC 2 cut(s) 1283, 1292
NdeI CATATG 1 cut(s) 439
NdeII GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
NlaIII CATG 6 cut(s) 155, 189, 395, 493, 554, 584
NlaIV GGNNCC 5 cut(s) 47, 55, 890, 923, 1016
NmeAIII GCCGAG 4 cut(s) 706, 748, 811, 1214
NmuCI GTSAC 4 cut(s) 78, 331, 690, 1071
NsiI ATGCAT 1 cut(s) 495
NspI RCATGY 1 cut(s) 493
PagI TCATGA 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 469
PfeI GAWTC 8 cut(s) 62, 131, 716, 737, 800, 821, 842, 1232
PkrI GCNGC 1 cut(s) 1285
PleI GAGTC 3 cut(s) 31, 239, 697
PmaCI CACGTG 1 cut(s) 1238
PmlI CACGTG 1 cut(s) 1238
PpsI GAGTC 3 cut(s) 31, 239, 697
Ppu21I YACGTR 1 cut(s) 1238
PpuMI RGGWCCY 3 cut(s) 888, 921, 1014
PshAI GACNNNNGTC 1 cut(s) 346
Psp5II RGGWCCY 3 cut(s) 888, 921, 1014
Psp6I CCWGG 3 cut(s) 48, 508, 1108
PspCI CACGTG 1 cut(s) 1238
PspEI GGTNACC 2 cut(s) 78, 1071
PspGI CCWGG 3 cut(s) 48, 508, 1108
PspN4I GGNNCC 5 cut(s) 47, 55, 890, 923, 1016
PspPI GGNCC 5 cut(s) 46, 888, 921, 1014, 1224
PspPPI RGGWCCY 3 cut(s) 888, 921, 1014
PsrI GAACNNNNNNTAC 2 cut(s) 1185, 1217
PsuI RGATCY 1 cut(s) 953
RsaI GTAC 3 cut(s) 88, 276, 1194
RsaNI GTAC 3 cut(s) 87, 275, 1193
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 221, 1145
SatI GCNGC 1 cut(s) 1284
Sau3AI GATC 9 cut(s) 305, 317, 683, 695, 881, 914, 947, 953, 980
Sau96I GGNCC 5 cut(s) 46, 888, 921, 1014, 1224
SchI GAGTC 3 cut(s) 32, 239, 698
ScrFI CCNGG 3 cut(s) 50, 510, 1110
SduI GDGCHC 3 cut(s) 600, 940, 1297
SexAI ACCWGGT 1 cut(s) 1108
SfaNI GCATC 3 cut(s) 644, 667, 1270
SfcI CTRYAG 1 cut(s) 1149
SinI GGWCC 5 cut(s) 46, 888, 921, 1014, 1224
Sse9I AATT 7 cut(s) 135, 293, 321, 351, 465, 1036, 1117
SsiI CCGC 1 cut(s) 1283
SspMI CTAG 7 cut(s) 336, 546, 576, 747, 1056, 1179, 1298
StyD4I CCNGG 3 cut(s) 48, 508, 1108
StyI CCWWGG 4 cut(s) 18, 1004, 1067, 1257
TaaI ACNGT 3 cut(s) 398, 611, 765
TaiI ACGT 2 cut(s) 143, 1240
TaqI TCGA 3 cut(s) 880, 983, 1343
TasI AATT 7 cut(s) 135, 293, 321, 351, 465, 1036, 1117
TatI WGTACW 1 cut(s) 1192
TauI GCSGC 1 cut(s) 1286
TfiI GAWTC 8 cut(s) 62, 131, 716, 737, 800, 821, 842, 1232
Tru1I TTAA 2 cut(s) 221, 1145
Tru9I TTAA 2 cut(s) 221, 1145
TscAI CASTG 2 cut(s) 221, 624
TseFI GTSAC 4 cut(s) 78, 331, 690, 1071
Tsp45I GTSAC 4 cut(s) 78, 331, 690, 1071
TspDTI ATGAA 5 cut(s) 140, 168, 243, 456, 1284
TspRI CASTG 2 cut(s) 221, 624
VpaK11BI GGWCC 5 cut(s) 46, 888, 921, 1014, 1224
XapI RAATTY 2 cut(s) 465, 1117
XbaI TCTAGA 3 cut(s) 545, 575, 1297
XceI RCATGY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 469
XspI CTAG 7 cut(s) 336, 546, 576, 747, 1056, 1179, 1298
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.