Rroxscaffold_1G00027130

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
34169869 .. 34174369
4501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027130.1

Sequence Viewer

Length: 1365 bp
ATGGGAGCCTTGGGACAGCCAAGGCCTTATTGGCTCATTTCAGTGTTTTATGGTTTGGCATTGTGCTTCTTAGCTAGTACTACTGTTCTTGCTAACAATCCTTACACTTATTCTTCACCACCACCTCCTCACCAAGCCCCTCAATACCCTCCTCCCAAGTATGAATCACCACCACCAAAATATGCTGAGCACCCTCCACCCCATTACAAGTCACCACCACCCCCGCCACCGCCGGAGCATGTGATACATCCTCCGTATCACTACAAGTCTCCCCCCGCCACCCTCACCTTCACCTCCACCTCCTTATGTCTACAAGTCTCCACCACCACCATCACCTCACCGCCACCTCCCTATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCACCACCTCCTTATGTCTACAAGTCTCCACCACCACCATCACCTTCACCGCCACCTCCCTATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCACCACCTCCTTATGTCTACAAGTCTCCACCACCACCATCACCTTCACCGCCACCTCCCTATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCACCACCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCTCCTCCTCCCTATTCTCCACCACCACCATCTCCATCACCTCCTCCTCCTTATGTCTACAAGTCTCCACCTCCACCATCACCGTCACCGCCTCCACCATATGTATACAAGTCCCCACCTCCTCCTTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCACCGCCTCCACCATACGTCTACAAGTCCCCACCTCCTCCATCTCCATCACCGCCTCCTCCATACTTCTACAAGTCACCACCACCTCCTTCCCCATCACCTCCTCCTCCCTATATTTATAAGTCACCTCCACCACCCTCACCGTCACCTCCTCCTCCTTATGTATACAAGTCCCCACCTCCACCTTCCCCATCACCGCCACCTCCATATGTCTATAAGTCTCCCCCTCCACCATCTCCCTCACCTCCTCCTCCTTATCTCTACAAGTCTCCTCCTCCCCCATCTCACTCTCCACCACCATACTACTACAAATATCTCGACTCCGATGGTTGGACTTGTTCTAATTCGTCGGTTTCTGGTTTTGGCTTCTTCCTCGACCACCGACGAGTTCGTTCATACGTAAACCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

48.93

Weight (kDa)

9.49

Isoelectric Point (pI)

149.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 1281
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 192
AoxI GGCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 192
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 7
Bpu1102I GCTNAGC 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 1351
BsaJI CCNNGG 2 cut(s) 9, 20
Bsc4I CCNNNNNNNGG 1 cut(s) 1281
BseDI CCNNGG 2 cut(s) 9, 20
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 1281
BseMII CTCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 4 cut(s) 27, 868, 964, 1108
BslI CCNNNNNNNGG 1 cut(s) 1281
BsmFI GGGAC 4 cut(s) 27, 868, 964, 1108
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1720I GCTNAGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 9, 20
BssNAI GTATAC 5 cut(s) 358, 502, 646, 877, 1117
BssT1I CCWWGG 2 cut(s) 9, 20
Bst1107I GTATAC 5 cut(s) 358, 502, 646, 877, 1117
Bst4CI ACNGT 3 cut(s) 85, 855, 1095
BstBAI YACGTR 1 cut(s) 1351
BstDEI CTNAG 2 cut(s) 70, 186
BstF5I GGATG 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 242
BstSNI TACGTA 1 cut(s) 1351
BstZ17I GTATAC 5 cut(s) 358, 502, 646, 877, 1117
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 239, 1358
CviJI RGCY 7 cut(s) 8, 19, 25, 34, 74, 137, 1317
CviKI_1 RGCY 7 cut(s) 8, 19, 25, 34, 74, 137, 1317
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 70, 186
Eco105I TACGTA 1 cut(s) 1351
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 9, 20
EcoT22I ATGCAT 1 cut(s) 1363
ErhI CCWWGG 2 cut(s) 9, 20
FaeI CATG 2 cut(s) 242, 1361
FaqI GGGAC 4 cut(s) 27, 868, 964, 1108
FatI CATG 2 cut(s) 238, 1357
FauI CCCGC 2 cut(s) 231, 283
FauNDI CATATG 2 cut(s) 871, 1159
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 233
Hin1II CATG 2 cut(s) 242, 1361
HinfI GANTC 2 cut(s) 164, 1271
HpaII CCGG 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 1276
Hpy188III TCNNGA 1 cut(s) 1268
Hpy99I CGWCG 2 cut(s) 1303, 1338
HpyCH4III ACNGT 3 cut(s) 85, 855, 1095
HpyCH4IV ACGT 2 cut(s) 969, 1350
HpyCH4V TGCA 1 cut(s) 1361
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 70, 186
HpySE526I ACGT 2 cut(s) 969, 1350
Hsp92II CATG 2 cut(s) 242, 1361
LmnI GCTCC 2 cut(s) 5, 235
LpnPI CCDG 2 cut(s) 246, 1293
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 969, 1350
MaeIII GTNAC 5 cut(s) 210, 855, 1026, 1074, 1095
MboII GAAGA 2 cut(s) 105, 1312
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 1294
MlyI GAGTC 1 cut(s) 1265
MmeI TCCRAC 1 cut(s) 1262
Mph1103I ATGCAT 1 cut(s) 1363
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 2 cut(s) 871, 1159
NlaIII CATG 2 cut(s) 242, 1361
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 5 cut(s) 210, 855, 1026, 1074, 1095
NsiI ATGCAT 1 cut(s) 1363
NspI RCATGY 1 cut(s) 242
PceI AGGCCT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 164
PleI GAGTC 1 cut(s) 1265
PpsI GAGTC 1 cut(s) 1265
Ppu21I YACGTR 1 cut(s) 1351
PsiI TTATAA 1 cut(s) 1071
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 41
ScaI AGTACT 1 cut(s) 79
SchI GAGTC 1 cut(s) 1265
SduI GDGCHC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 41
SnaBI TACGTA 1 cut(s) 1351
Sse9I AATT 1 cut(s) 1294
SseBI AGGCCT 1 cut(s) 25
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 2 cut(s) 9, 20
TaaI ACNGT 3 cut(s) 85, 855, 1095
TaiI ACGT 2 cut(s) 972, 1353
TaqI TCGA 2 cut(s) 1269, 1326
TasI AATT 1 cut(s) 1294
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 5 cut(s) 210, 855, 1026, 1074, 1095
Tsp45I GTSAC 5 cut(s) 210, 855, 1026, 1074, 1095
TspDTI ATGAA 2 cut(s) 177, 1335
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.