RLG00000014729

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004531
Physical Location & Seq
Reverse (-)
56881114 .. 56882937
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014729

Sequence Viewer

Length: 372 bp
ATGATTGTTATGTACCACCAAGAGAGAGGGGATGAATTGGTGGCTGTGATGATTCTTGATCTGAGACATTGGCTTCTGTTAGAAATAACTGGGGAGCAAGTTATAGCTGGGCCTATTCAGATCGAGATGGCTTTGGGGCTGGAGGTTTTGTGCTCCGGTTTCAAGGAAGGTGATGACGGAGCTGGCTGGTTTCGCTCCAAACGACGGCGACCTTTGCGGCCATCATTGATGGAGTTGGAGGCTTCAATGCAGAGACCCTTACTTGTTCGGGTTAGGGTCAGCATGTGTTGCAGCTCGTCCTTCGTCTTCTGGGTGGTGGTGCAAGATGGTTGGGCAGCTGAACGGGGCAGTGGCGTCGGTGAATGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.91

Weight (kDa)

5.37

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 2 cut(s) 163, 246
AluBI AGCT 4 cut(s) 107, 182, 294, 338
AluI AGCT 4 cut(s) 107, 182, 294, 338
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 58, 247
AoxI GGCC 2 cut(s) 110, 218
ApeKI GCWGC 2 cut(s) 291, 335
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 182, 371
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 303, 347
BccI CCATC 4 cut(s) 121, 223, 229, 320
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BcoDI GTCTC 2 cut(s) 58, 247
BisI GCNGC 3 cut(s) 218, 292, 336
BlsI GCNGC 3 cut(s) 219, 293, 337
BmgT120I GGNCC 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 247
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 303, 347
BseYI CCCAGC 1 cut(s) 107
BshFI GGCC 2 cut(s) 112, 220
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 58, 247
BsnI GGCC 2 cut(s) 112, 220
Bso31I GGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 58, 120
BspACI CCGC 1 cut(s) 217
BspANI GGCC 2 cut(s) 112, 220
BspCNI CTCAG 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 247
BsrI ACTGG 1 cut(s) 94
BssMI GATC 2 cut(s) 58, 120
BssNI GRCGYC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 61, 123
BstMAI GTCTC 2 cut(s) 58, 247
BstMBI GATC 2 cut(s) 58, 120
BstMWI GCNNNNNNNGC 3 cut(s) 192, 214, 288
BstNSI RCATGY 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 303, 347
BstV2I GAAGAC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 112, 220
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 110
CseI GACGC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 283
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 60, 122
DpnII GATC 2 cut(s) 58, 120
EaeI YGGCCR 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 247
FaeI CATG 1 cut(s) 286
FaiI YATR 4 cut(s) 11, 104, 284, 370
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 218, 292, 336
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 218, 292, 336
GluI GCNGC 3 cut(s) 218, 292, 336
GsaI CCCAGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 2 cut(s) 112, 220
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 286
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 182, 371
Hpy188I TCNGA 2 cut(s) 63, 120
Hpy188III TCNNGA 2 cut(s) 56, 124
Hpy99I CGWCG 2 cut(s) 207, 359
HpyAV CCTTC 2 cut(s) 161, 310
HpyCH4V TGCA 3 cut(s) 250, 291, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 214, 288
HpyF3I CTNAG 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 286
Kzo9I GATC 2 cut(s) 58, 120
LmnI GCTCC 4 cut(s) 94, 158, 179, 200
LpnPI CCDG 7 cut(s) 75, 93, 125, 168, 169, 172, 295
Lsp1109I GCAGC 2 cut(s) 303, 347
MalI GATC 2 cut(s) 60, 122
MboI GATC 2 cut(s) 58, 120
MboII GAAGA 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 3 cut(s) 20, 136, 232
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 192, 214, 288
NdeII GATC 2 cut(s) 58, 120
NlaIII CATG 1 cut(s) 286
NspI RCATGY 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 3 cut(s) 219, 293, 337
PspFI CCCAGC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SatI GCNGC 3 cut(s) 218, 292, 336
Sau3AI GATC 2 cut(s) 58, 120
Sau96I GGNCC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 155
SetI ASST 7 cut(s) 109, 147, 172, 184, 214, 296, 340
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 217
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 1 cut(s) 355
TseI GCWGC 2 cut(s) 291, 335
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 355
XceI RCATGY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.