Rw0G013450

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00605
Physical Location & Seq
Reverse (-)
5537 .. 6896
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013450.1

Sequence Viewer

Length: 1161 bp
ATGGGAGCCTTGGGACAGCCAAGGCCTTCTTGGCTCATTACAATGTTTTATTGTTTGGCATTTTGCTTCTTAGCTAGTACTACTGTTCTTGCTAACAATCCTTACACTTATTCTTCACCACCACCTCCTCACCATGCCCCTCAATACCCTCCTCCCAAGTATCAATCACCACCACCAAAATATCCTGAGCACCCTCCACACCATTACAAGTCACCACCACCCCCGCCACCGCCGAAGCATGTGATACATCCTCCGTATCACTACAAGTCTCCCCCGCCACCCTCACCTTCACCTCCACCTCCTTATGTCTACAAATCTCCTCCACCCCCATCACCTTCACCGCCACCTCCATATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCTTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCCTATGTCTACAAGTCTCCACCACCCCCATCACCATCACCGCCACCTCCTTATGTCTACAAGTCTCCTCCACCACCCTCACCTTCACCTCCACCTCCCTATGTCTACAAGTCTCCACCACCCCCATCACCATCACCACCACCGCCTTATGTCTATAAATCACCTCCACCACCCTCACCGTCACCTCCACCTCCTTATGTTTACAAGTCTCCACCACCCCCATCACCTTCACCTCCACCTCCTTATGTTTATAAGTCTCCACCCCCACCCCCACCATCACCATCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCACCTCCACCATATGTTTACAAGTCCCCACCTCCCCCTTCTCCATCACCACCTCCTCCATATGTCTACAAGTCACCACCACCACCCTCACCATCATCTCCTCCACCATACCACTACAAATCACCACCACCCCCATCACCGTCACCTCCACCTCCATATGTGTACAAGTCTCCACCTCCACCTTCCCCATCACCACCACCTCCATATGTCTACAAGTCTCCACCTCCACCATCTCCTTCACCTCCCCCTCCTTATATCTACAAGTCACCACCTCCGCCATCTTACTCCCCACCTCCATATTACTATAAGTCACCTCCACCTCCGAAACACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

41.7

Weight (kDa)

9.63

Isoelectric Point (pI)

164.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
AfaI GTAC 2 cut(s) 79, 989
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 192
AoxI GGCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 192
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 7
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 9, 20
BseDI CCNNGG 2 cut(s) 9, 20
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 3 cut(s) 27, 787, 835
BsmFI GGGAC 3 cut(s) 27, 787, 835
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 987
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 987
BssECI CCNNGG 2 cut(s) 9, 20
BssNAI GTATAC 1 cut(s) 358
BssT1I CCWWGG 2 cut(s) 9, 20
Bst1107I GTATAC 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 85, 672, 966
BstAUI TGTACA 1 cut(s) 987
BstDEI CTNAG 2 cut(s) 70, 186
BstF5I GGATG 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 247
Csp6I GTAC 2 cut(s) 78, 988
CviAII CATG 2 cut(s) 134, 239
CviJI RGCY 5 cut(s) 8, 19, 25, 34, 74
CviKI_1 RGCY 5 cut(s) 8, 19, 25, 34, 74
CviQI GTAC 2 cut(s) 78, 988
DdeI CTNAG 2 cut(s) 70, 186
EciI GGCGGA 1 cut(s) 1089
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 9, 20
ErhI CCWWGG 2 cut(s) 9, 20
FaeI CATG 2 cut(s) 137, 242
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 3 cut(s) 27, 787, 835
FatI CATG 2 cut(s) 133, 238
FauI CCCGC 2 cut(s) 231, 282
FauNDI CATATG 6 cut(s) 352, 790, 838, 886, 982, 1030
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 2 cut(s) 137, 242
Hpy188I TCNGA 1 cut(s) 1149
Hpy188III TCNNGA 1 cut(s) 185
HpyCH4III ACNGT 3 cut(s) 85, 672, 966
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 70, 186
Hsp92II CATG 2 cut(s) 137, 242
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 1 cut(s) 198
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 6 cut(s) 210, 672, 897, 966, 1089, 1134
MboII GAAGA 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 6 cut(s) 352, 790, 838, 886, 982, 1030
NlaIII CATG 2 cut(s) 137, 242
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 6 cut(s) 210, 672, 897, 966, 1089, 1134
NspI RCATGY 1 cut(s) 242
PceI AGGCCT 1 cut(s) 25
PsiI TTATAA 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 2 cut(s) 79, 989
RsaNI GTAC 2 cut(s) 78, 988
RseI CAYNNNNRTG 1 cut(s) 41
ScaI AGTACT 1 cut(s) 79
SduI GDGCHC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 25
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 2 cut(s) 9, 20
TaaI ACNGT 3 cut(s) 85, 672, 966
TatI WGTACW 2 cut(s) 77, 987
TseFI GTSAC 6 cut(s) 210, 672, 897, 966, 1089, 1134
Tsp45I GTSAC 6 cut(s) 210, 672, 897, 966, 1089, 1134
TspGWI ACGGA 1 cut(s) 243
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.