Rh5CG386300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
50918272 .. 50919426
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG386300.1

Sequence Viewer

Length: 1155 bp
ATGGGAGCTTTGGGACAGCCAAGGCCTTATTGGCTCATTTCAGTGTTTTATGGTTTGGCATTGTGCTTCTTAGCTAGTACTACTGTTCTTGCTAACAATCCTTACACTTATTCTTCACCACCACCTCCTCACCATGCCCCTCAATACCCTCCTCCCAAGTATCAATCACCACCACCAAAATATCCTGAGCACCCTCCACACCATTACAAGTCACCACCACCCCCGCCACCGCCGAAGCCTGTGATACATCCTCCGTATCACTACAAGTCTCCCCCGCCACCCTCACCTTCACCTCCACCTCCTTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCGCCACCTCCATATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCCTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCACCACCGCCATACATTTATAAATCACCACCACCACCATCTCCATCACCACCTCCTCCTTACGTTTACAAGTCTCCACCACCACCATCTCCATCACCTCCTCCTCCTTATGTCTACAAGTCTCCACCTCCACCATCACCGTCACCGCCTCCACCATATGTATACAAGTCCCCACCTCCTCCCTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCACCGCCTCCACCATACGTCTACAAGTCCCCACCTCCTCCATCTCCATCACCGCCTCCTCCATATGTCTACAAGTCACCACCACCTCCTTCCCCATCACCCCCTCCTCCCTATATTTATAAGTCACCTCCACCACCCTCACCGTCACCTCCTCCTCCTTATGTATACAAGTCCCCACCTCCACCTTCCCCATCACCGCCACCTCCATATGTCTATAAGTCTCCCCCTCCACCATCTCCCTCACCTCCTCCTCCTTATCTCTACAAGTCTCCTCCTCCCCCATCTCACTCTCCACCACCATACTACTACAAGTCCCCTCCACCTCCAAACCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

41.38

Weight (kDa)

9.63

Isoelectric Point (pI)

161.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 504, 936
AfaI GTAC 1 cut(s) 79
AluBI AGCT 2 cut(s) 8, 74
AluI AGCT 2 cut(s) 8, 74
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
AoxI GGCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 192
BcoDI GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 6 cut(s) 27, 637, 733, 829, 973, 1114
BsmAI GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
BsmFI GGGAC 6 cut(s) 27, 637, 733, 829, 973, 1114
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 192
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 20
BssNAI GTATAC 3 cut(s) 358, 646, 982
BssT1I CCWWGG 1 cut(s) 20
Bst1107I GTATAC 3 cut(s) 358, 646, 982
Bst4CI ACNGT 3 cut(s) 85, 624, 960
BstDEI CTNAG 2 cut(s) 70, 186
BstF5I GGATG 1 cut(s) 247
BstMAI GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstZ17I GTATAC 3 cut(s) 358, 646, 982
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 134
CviJI RGCY 6 cut(s) 8, 19, 25, 34, 74, 238
CviKI_1 RGCY 6 cut(s) 8, 19, 25, 34, 74, 238
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 70, 186
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 137
FaqI GGGAC 6 cut(s) 27, 637, 733, 829, 973, 1114
FatI CATG 1 cut(s) 133
FauI CCCGC 2 cut(s) 231, 282
FauNDI CATATG 5 cut(s) 352, 640, 736, 880, 1024
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 185
HpyCH4III ACNGT 3 cut(s) 85, 624, 960
HpyCH4IV ACGT 2 cut(s) 546, 834
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 70, 186
HpySE526I ACGT 2 cut(s) 546, 834
Hsp92II CATG 1 cut(s) 137
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 2 cut(s) 198, 252
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 546, 834
MaeIII GTNAC 5 cut(s) 210, 624, 891, 939, 960
MboII GAAGA 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 5 cut(s) 352, 640, 736, 880, 1024
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 5 cut(s) 210, 624, 891, 939, 960
PceI AGGCCT 1 cut(s) 25
PsiI TTATAA 2 cut(s) 504, 936
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 41
ScaI AGTACT 1 cut(s) 79
SduI GDGCHC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 25
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 3 cut(s) 85, 624, 960
TaiI ACGT 2 cut(s) 549, 837
TatI WGTACW 1 cut(s) 77
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 5 cut(s) 210, 624, 891, 939, 960
Tsp45I GTSAC 5 cut(s) 210, 624, 891, 939, 960
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.