FvH4_3g09800

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
5719556 .. 5720224
669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09800.t1

Sequence Viewer

Length: 252 bp
ATGGGAGCCTTGGGAGAGCCAAGGCCTTATTGGATTATTTCAGTGTTTTGTGGTTTGGCATTGTGCTTCTTAGCTAGTCCCGCTGTTCTTGCAAACAATCCTTACACTTATTCCTCACCACCACCGCCTCACCAAGCTACTCAATACCCTCCTCCCAAGTATCAATCACCACCACAATATGCTAAGCATCCTCGACACCATTACAAGTCACCACCACCCCCACTACCGCCGAACTACCGCCGAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.34

Weight (kDa)

9.64

Isoelectric Point (pI)

86.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 81, 125, 227, 238
AluBI AGCT 2 cut(s) 74, 137
AluI AGCT 2 cut(s) 74, 137
AoxI GGCC 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 108, 122, 159, 201
BfaI CTAG 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 9, 20
BseDI CCNNGG 2 cut(s) 9, 20
BseGI GGATG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 25
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 25
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 4 cut(s) 81, 125, 227, 238
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 9, 20
BssT1I CCWWGG 2 cut(s) 9, 20
BstDEI CTNAG 2 cut(s) 70, 183
BstF5I GGATG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 80, 89
BstNSI RCATGY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 48
CviAII CATG 1 cut(s) 247
CviJI RGCY 5 cut(s) 8, 19, 25, 74, 137
CviKI_1 RGCY 5 cut(s) 8, 19, 25, 74, 137
DdeI CTNAG 2 cut(s) 70, 183
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 9, 20
ErhI CCWWGG 2 cut(s) 9, 20
FaeI CATG 1 cut(s) 250
FaiI YATR 2 cut(s) 180, 248
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 246
FauI CCCGC 1 cut(s) 88
FokI GGATG 1 cut(s) 174
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 1 cut(s) 250
HphI GGTGA 4 cut(s) 108, 122, 159, 201
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 89
HpyF3I CTNAG 2 cut(s) 70, 183
Hsp92II CATG 1 cut(s) 250
LmnI GCTCC 1 cut(s) 5
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 124, 138, 159, 162, 201
MspA1I CMGCKG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 80, 89
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 207
NspI RCATGY 1 cut(s) 250
PceI AGGCCT 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 7
SetI ASST 2 cut(s) 76, 139
SfaNI GCATC 1 cut(s) 196
SgeI CNNG 9 cut(s) 22, 33, 87, 92, 101, 146, 169, 204, 217
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 4 cut(s) 81, 125, 227, 238
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 2 cut(s) 9, 20
TaqI TCGA 1 cut(s) 193
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 207
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.