Rw0G013460

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00605
Physical Location & Seq
Reverse (-)
21522 .. 22676
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013460.1

Sequence Viewer

Length: 1155 bp
ATGGGAGCTTTGGGACAGCCAAGGCCTTCTTGGCTCATTACAATGTTTTATTGTTTGGCATTGTGCTTCTTAGCTAGTACTACTGTTCTTGCTAACAATCCTTACACTTATTCTTCACCACCACCTCCTCACCATGCCCCTCAATACCCTCCTCCCAAGTATCAATCACCACCACCAAAATATCCTGAGAACCCTCCACACCATTACAAGTCACCACCACCCCCGCCACCGCCGAAGCATGTGATACATCCTCCGTATCACTACAAGTCTCCCCCGCCACCCTCACCTCCACCTCCACCTCCTTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCGACACCTCCATATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCACCACCTCCATACATTTATAAATCACCACCACCACCATCTCCATCACAACCTCCTTATTATGTTTACAAGTCTCCACCACCACCATCTCCATCACCTCCTCCTCCTTATGTCTACAAGTCTCCACCCCCACCATCACCGTCACCGCCTCCACCATATGTATACAAGTCCCCACCTCCTCCCTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTTTCCATCACCGCCTCCACCATACGTGTACAAGTCCCCACCTCCTCCATCTCCATCACCGCCTCCTCCATACGTCTACAAGTCACCACCACCTCCTTCCCCATCACCTCCTCCTCCCTATATTTATAAGTCACCTCCACCACCCTCACCGTCACCTCCTCCTCCTTATGTATACAAGTCCCCACCTCCACCTTCCCCATCACCGCCACCTCCATATGTCTATAAGTCTCCCCCTCCACCATCTCCCTCACCTCCTCCTCCTTATCTCTACAAGTCTCCTCCTCCCCCATCTCACTCTCCACCACCATACTACTACAAGTCCCCTCCACCTCCAAACCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

41.58

Weight (kDa)

9.61

Isoelectric Point (pI)

160.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 504, 936
AccI GTMKAC 9 cut(s) 309, 357, 405, 453, 597, 645, 741, 885, 981
AfaI GTAC 2 cut(s) 79, 839
AflIII ACRYGT 1 cut(s) 834
AluBI AGCT 2 cut(s) 8, 74
AluI AGCT 2 cut(s) 8, 74
Alw26I GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
AoxI GGCC 1 cut(s) 23
BcoDI GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 835
BsaJI CCNNGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 25
BslFI GGGAC 6 cut(s) 27, 637, 733, 829, 973, 1114
BsmAI GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
BsmFI GGGAC 6 cut(s) 27, 637, 733, 829, 973, 1114
BsnI GGCC 1 cut(s) 25
Bsp1407I TGTACA 1 cut(s) 837
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 837
BssECI CCNNGG 1 cut(s) 20
BssNAI GTATAC 3 cut(s) 358, 646, 982
BssT1I CCWWGG 1 cut(s) 20
Bst1107I GTATAC 3 cut(s) 358, 646, 982
Bst4CI ACNGT 3 cut(s) 85, 624, 960
BstAUI TGTACA 1 cut(s) 837
BstBAI YACGTR 1 cut(s) 835
BstDEI CTNAG 2 cut(s) 70, 186
BstF5I GGATG 1 cut(s) 247
BstMAI GTCTC 9 cut(s) 273, 321, 369, 417, 465, 561, 609, 1041, 1089
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 242
BstZ17I GTATAC 3 cut(s) 358, 646, 982
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 247
Csp6I GTAC 2 cut(s) 78, 838
CviAII CATG 2 cut(s) 134, 239
CviJI RGCY 5 cut(s) 8, 19, 25, 34, 74
CviKI_1 RGCY 5 cut(s) 8, 19, 25, 34, 74
CviQI GTAC 2 cut(s) 78, 838
DdeI CTNAG 2 cut(s) 70, 186
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 137, 242
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 6 cut(s) 27, 637, 733, 829, 973, 1114
FatI CATG 2 cut(s) 133, 238
FauI CCCGC 2 cut(s) 231, 282
FauNDI CATATG 4 cut(s) 352, 640, 736, 1024
FblI GTMKAC 9 cut(s) 309, 357, 405, 453, 597, 645, 741, 885, 981
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 2 cut(s) 137, 242
Hpy188III TCNNGA 1 cut(s) 185
HpyAV CCTTC 9 cut(s) 36, 345, 393, 441, 489, 723, 771, 915, 1011
HpyCH4III ACNGT 3 cut(s) 85, 624, 960
HpyCH4IV ACGT 2 cut(s) 834, 882
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 70, 186
HpySE526I ACGT 2 cut(s) 834, 882
Hsp92II CATG 2 cut(s) 137, 242
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 1 cut(s) 198
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 834, 882
MaeIII GTNAC 5 cut(s) 210, 624, 891, 939, 960
MboII GAAGA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 4 cut(s) 352, 640, 736, 1024
NlaIII CATG 2 cut(s) 137, 242
NmuCI GTSAC 5 cut(s) 210, 624, 891, 939, 960
NspI RCATGY 1 cut(s) 242
PceI AGGCCT 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 835
PsiI TTATAA 2 cut(s) 504, 936
RsaI GTAC 2 cut(s) 79, 839
RsaNI GTAC 2 cut(s) 78, 838
RseI CAYNNNNRTG 1 cut(s) 41
ScaI AGTACT 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 25
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 3 cut(s) 85, 624, 960
TaiI ACGT 2 cut(s) 837, 885
TatI WGTACW 2 cut(s) 77, 837
TseFI GTSAC 5 cut(s) 210, 624, 891, 939, 960
Tsp45I GTSAC 5 cut(s) 210, 624, 891, 939, 960
TspGWI ACGGA 1 cut(s) 243
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmiI GTMKAC 9 cut(s) 309, 357, 405, 453, 597, 645, 741, 885, 981
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.