Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004531

Physical Location & Seq

Genomic Coordinates Forward (+)

68938014 .. 68938376

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG483600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTACATTTTAACACATACCAACTTGAGAAAACCCTAAAACTCTCTCTCGAGAACACTAAGGTTGCGGCGGTGTGGCACTTCCAGATCTCGTTCGATGGCTCTCCGACGTCGCCTCGATGTCGTGGTGATGTTGCCGGATGGGTGACATATGGTTTAAACCTCTGGGATTTCTTTGCTTCCGGTATGATAGTTGTAGCTGGGCCTATTCGGATTGAGATAGCTTTGGGGTTGGAGGTTTTGTGCGTGCCGGTTTCAGGGAAGGCAACGACGGCTGCTAGGTTTCCCTCCAGGCGACGGCGACTTGTGCGACTACCATTGAGGGGTTTTGGGGCTTCAATGCAGAGACCCTTCCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

10.55

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09800
prunus_persica	Prupe.4G245400_v2.0.a1 Prupe.4G245500_v2.0.a1
pyrus_communis	pycom03g13480
rosa_chinensis	RchiOBHm_Chr5g0051641 RchiOBHm_Chr5g0051651
rosa_laevigata	RLG00000006362 RLG00000012790 RLG00000014729 RLG00000034869 RLG00000037111
rosa_multiflora	Rmu_sc0014445.1_g000009 Rmu_ssc0000089.1_g000031 Rmu_ssc0000089.1_g000033
rosa_roxburghii	Rroxscaffold_1G00027110 Rroxscaffold_1G00027130 Rroxscaffold_1G00027160
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh5AG349900 Rh5BG361600 Rh5BG361700 Rh5CG386200 Rh5CG386300 Rh5CG386400 Rh5CG386500 Rh5DG376500 Rh5DG376600 Rh7DG483600
rosa_wichuraiana	Rw0G013450 Rw0G013460 Rw5G033080 Rw5G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	113
AciI	CCGC	2 cut(s)	68, 71
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	257, 297, 323
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	2 cut(s)	200, 224
AluI	AGCT	2 cut(s)	200, 224
Alw26I	GTCTC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	140, 157
AvaI	CYCGRG	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	92, 135
BceAI	ACGGC	2 cut(s)	288, 314
BciT130I	CCWGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	279
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	2 cut(s)	69, 276
BlsI	GCNGC	2 cut(s)	70, 277
Bme1390I	CCNGG	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 297, 323
Bse118I	RCCGGY	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	3 cut(s)	257, 297, 323
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	138, 183, 251
BslI	CCNNNNNNNGG	3 cut(s)	257, 297, 323
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	68, 71
BspANI	GGCC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	250
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 307
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	203
CviJI	RGCY	6 cut(s)	102, 200, 205, 224, 275, 335
CviKI_1	RGCY	6 cut(s)	102, 200, 205, 224, 275, 335
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DraI	TTTAAA	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	290
FaiI	YATR	4 cut(s)	19, 151, 153, 188
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	69, 276
FokI	GGATG	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	69, 276
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	2 cut(s)	69, 276
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	3 cut(s)	138, 183, 251
Hin1I	GRCGYC	1 cut(s)	110
HpaII	CCGG	3 cut(s)	138, 183, 251
HphI	GGTGA	2 cut(s)	140, 157
Hpy188I	TCNGA	2 cut(s)	108, 213
Hpy188III	TCNNGA	3 cut(s)	50, 52, 85
Hpy99I	CGWCG	4 cut(s)	112, 115, 274, 300
HpyAV	CCTTC	2 cut(s)	256, 361
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 307
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	9 cut(s)	98, 151, 151, 186, 196, 243, 264, 277, 304
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	3, 145
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MflI	RGATCY	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	131, 213
MnlI	CCTC	5 cut(s)	126, 173, 229, 298, 315
MseI	TTAA	2 cut(s)	12, 158
MspI	CCGG	3 cut(s)	138, 183, 251
MspR9I	CCNGG	1 cut(s)	292
MssI	GTTTAAAC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	272, 307
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	70, 277
PmeI	GTTTAAAC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	12, 158
SatI	GCNGC	2 cut(s)	69, 276
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	292
SetI	ASST	7 cut(s)	66, 113, 165, 202, 226, 240, 284
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	26, 50
SmoI	CTYRAG	2 cut(s)	26, 50
SsiI	CCGC	2 cut(s)	68, 71
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	290
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	3 cut(s)	51, 96, 118
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	12, 158
Tru9I	TTAA	2 cut(s)	12, 158
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	50
XspI	CTAG	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.