RchiOBHm_Chr5g0051651

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
52882095 .. 52883200
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32910

Sequence Viewer

Length: 1059 bp
ATGGGAGCCTTGGGACAGCCAAGGCCTTCTTGGCTCATTACAATGTTTTATTGTTTGGCATTTTGCTTCTTAGCTAGTACTACTGTTCTTGCTAACAATCCTTACACTTATTCTTCACCACCACCTCCTCACCATGCCCCTGAATACCCTCCTCCCAAGTATCAATCACCACCACCAAAATATCCTGAGCACCCTCCACACCATTACAAGTCACCACCACCCCCGCCACCACCGAAGCATGTGATACATCCTCCGTATCACTACAAGTCTCCCCCGCCACCCTCACATTCACCTCCACCTCCTTATGTCTACAAATCTCCACCACCCCCATCACCTTCACCGCCACCTCCATATGTATACAAGTCTCCACCACCTCCATCACCTTCACCTTCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCTTATGTCTACAAGTCTCCTCCACCCCCTTCACCTTCACCGCCACCTCCCTATGTCTACAAGTCTCCACCACCCCCATCACCATCACCACCACCGCCTTATGTCTATAAATCACCGCCACCACCCTCACCGTCACCTCCACCTCCTTATGTTTACAAGTCTCCACCACCCCCATCACCTTCACCTCCACCTCCTTATGTTTATAAGTCTCCACCCCCACCATCACCATCACCGCCTCCACCATATGTCTACAAGTCCCCACCTCCTCCTTCTCCATCACCACCTCCACCATATGTTTACAAGTCCCCACCTCCCCCTTCTCCATCACCACCTCCTCCATACGTCTACAAGTCACCACCACCACCTTCACCATCATCTCCTCCACCGTACCACTACAAATCACCACCACCCCCATCACCGTCACCTCCACCTCCTTATGTGTACAAGTCTCCACCTCCACCTTCCCCATCACCACCACCTCCATATGTCTACAAGTCTCCACCTCCACCATCTCCTTCACCTCCCCCTCCTTATATCTACAAGTCACCACCTCCGCCATCTTACTCCCCACCTCCATATTACTATAAGTCACCTCCACCTCCGAAACACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

38.16

Weight (kDa)

9.59

Isoelectric Point (pI)

161.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AccI GTMKAC 8 cut(s) 309, 357, 405, 453, 501, 693, 789, 933
AciI CCGC 9 cut(s) 224, 275, 341, 437, 485, 539, 560, 677, 998
AfaI GTAC 3 cut(s) 79, 833, 887
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 9 cut(s) 273, 369, 417, 465, 513, 609, 657, 897, 945
AoxI GGCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 192
BcoDI GTCTC 9 cut(s) 273, 369, 417, 465, 513, 609, 657, 897, 945
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 7
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 9, 20
BseDI CCNNGG 2 cut(s) 9, 20
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 8 cut(s) 117, 141, 384, 405, 453, 699, 768, 813
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 3 cut(s) 27, 685, 733
BsmAI GTCTC 9 cut(s) 273, 369, 417, 465, 513, 609, 657, 897, 945
BsmFI GGGAC 3 cut(s) 27, 685, 733
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 885
BspACI CCGC 9 cut(s) 224, 275, 341, 437, 485, 539, 560, 677, 998
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 885
BssECI CCNNGG 2 cut(s) 9, 20
BssNAI GTATAC 1 cut(s) 358
BssT1I CCWWGG 2 cut(s) 9, 20
Bst1107I GTATAC 1 cut(s) 358
Bst4CI ACNGT 4 cut(s) 85, 576, 831, 864
BstAUI TGTACA 1 cut(s) 885
BstDEI CTNAG 2 cut(s) 70, 186
BstF5I GGATG 1 cut(s) 247
BstMAI GTCTC 9 cut(s) 273, 369, 417, 465, 513, 609, 657, 897, 945
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 247
Csp6I GTAC 3 cut(s) 78, 832, 886
CviAII CATG 2 cut(s) 134, 239
CviJI RGCY 5 cut(s) 8, 19, 25, 34, 74
CviKI_1 RGCY 5 cut(s) 8, 19, 25, 34, 74
CviQI GTAC 3 cut(s) 78, 832, 886
DdeI CTNAG 2 cut(s) 70, 186
EciI GGCGGA 1 cut(s) 987
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 9, 20
ErhI CCWWGG 2 cut(s) 9, 20
FaeI CATG 2 cut(s) 137, 242
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 3 cut(s) 27, 685, 733
FatI CATG 2 cut(s) 133, 238
FauI CCCGC 2 cut(s) 231, 282
FauNDI CATATG 4 cut(s) 352, 688, 736, 928
FblI GTMKAC 8 cut(s) 309, 357, 405, 453, 501, 693, 789, 933
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 2 cut(s) 137, 242
Hpy188I TCNGA 1 cut(s) 1047
Hpy188III TCNNGA 1 cut(s) 185
HpyCH4III ACNGT 4 cut(s) 85, 576, 831, 864
HpyCH4IV ACGT 1 cut(s) 786
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 70, 186
HpySE526I ACGT 1 cut(s) 786
Hsp92II CATG 2 cut(s) 137, 242
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 2 cut(s) 153, 198
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 6 cut(s) 210, 576, 795, 864, 987, 1032
MboII GAAGA 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 4 cut(s) 352, 688, 736, 928
NlaIII CATG 2 cut(s) 137, 242
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 6 cut(s) 210, 576, 795, 864, 987, 1032
NspI RCATGY 1 cut(s) 242
PceI AGGCCT 1 cut(s) 25
PsiI TTATAA 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 3 cut(s) 79, 833, 887
RsaNI GTAC 3 cut(s) 78, 832, 886
RseI CAYNNNNRTG 1 cut(s) 41
ScaI AGTACT 1 cut(s) 79
SduI GDGCHC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 9 cut(s) 224, 275, 341, 437, 485, 539, 560, 677, 998
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 2 cut(s) 9, 20
TaaI ACNGT 4 cut(s) 85, 576, 831, 864
TaiI ACGT 1 cut(s) 789
TatI WGTACW 2 cut(s) 77, 885
TseFI GTSAC 6 cut(s) 210, 576, 795, 864, 987, 1032
Tsp45I GTSAC 6 cut(s) 210, 576, 795, 864, 987, 1032
TspGWI ACGGA 1 cut(s) 243
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmiI GTMKAC 8 cut(s) 309, 357, 405, 453, 501, 693, 789, 933
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.