pycom03g13480

Extensin-2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
14499834 .. 14501780
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13480.1

Sequence Viewer

Length: 1947 bp
ATGATAGCCTCGAAACAGCCGAGGCATTGGCCTCCAATGTTTTATGTCGTGGCATTATGCCTTTTAGCCACAAGTGTGCTTGCTAATAAGCCTTACACTTATTCTTCACCACCACCACCCCACAGCACAAAACATTACCACAATTTCCCACCACCAAAGCAATCTGCGCACCCTCCATACCGTTACAAGTCTCCACCACCCCCATCACCCTCACCACCATCACCATATGTCTACAAATCTCCTCCACCCCCATCTCCATCACCTCCTCCTCCTTATGTCTATAAGTCACCACCACCACCTTCCCCATCACCTCCTCCTCCCTATGTCTACAAGTCGCCACCACCCCCATCACCATCACCTCCACCTCCTTATGTCTACAAGTCGCCACCACCTCCATCACCATCACCTCCACCACCTTATGTCTACAAGTCACCACCACCTCCATCACCATCACCCCCTCCTCCATATGTCTACAAGTCACCACCACCTCCATCACCATCACCTTCTCCTCCCTATGTGTACAAGTCACCACCGCCTCCTTCACCCTCACCTCCTCCTCCTTATGTCTACAAGTCTCCACCACCCCCATCACCCTCACCACCACCTCCATATGTCTACAAATCTCCTCCACCACCATCTCCATCACCTCCACCTCCTTATGTCTACAAGTCGCCACCACCTCCGTCACCATCACCTCCACCACCTTATGTCTACAAGTCACCACCACCTCCATCACCATCACCCCCTCCTCCATATGTCTACAAGTCCCCACCACCTCCATCACCATCACCTCCACCACCTTATGTCTACAAGTCACCACCACCTCCATCACCATCACCCCCTCCTCCATATGTCTACAGGTCACCACCACCTCCATCACCATCACCTCCTCCTCCCTATGTGTACAAGTCACCACCACCTCCTTCACCCTCACCTCCTCCTCCTTATGTCTACAAGTCTCCACCACCCCCATCATCCTCACCACCACCTCCATATGTCTACAAATCTCCTCCACCCCCATCTCCATCACCTCCTCCTCCTTATGTCTATAAATCGCCACCACCTCCATCACCATCACCTCCACCTCCTTATGTCTACAAGTCGCCACCACCTCCATCACCTTCACCCCCTCCTCCGTATGTCTACAAGTCACCACCACCTCCTTCACCTTCACCTCCTCCTCCCTATGTGTACAAGTCACCACCACCTCCTTCACCCTCACCTCCTCCTCCTTATGTGTACAAGTCTCCACCACCCCCATCACCCTCACCACCACCTCCATATGTCTACAAATCTCCTCCACCCCCATCTCCATCACCTCCTCCTCCTTATGTCTATAAGTCACCACCACCACCTTCCCCATCACCTCCTCCTCCCTATGTGTACAAGTCGCCGCCACCTCCATCACCATCACCCCCTCCTCCCTATATCTACAAGTCGCCACCACCACCCTCACCATCACCTCCTCCTCCTTATGTCTATAAATCACCACCACCACCCTCACCATCACCTCCGCCTCCCTATGTATACAAGTCACCACCACCTCCATCACCATCACCTCCACCTCCTTATGTCTACAAGTCACCACCACCTCCATCTCCATCACCTCCACCTCCCTACATCTATAAATCACCACCACCTCCATCACCTTCACCTCCTCCTCCTTATGTTTACAAGTCACCACCACCTCCTTCACCTTCACCTCCTCCTCCTTATGTCTACAAATCACCACCTCCACCGTCACCTTCCCCTCCTCCTCCATACCACTACAAATCACCTCCACCACCAGCAAAGTCACCACCACCGCCTTACCACTACAAGTCCCCACCACCACCATCAAAGTCCCCACCACCTCCATACATCTACAGCTCACCACCTCCTCCATTGAAGTCTCCACCACCACCTGCATACTACTACAGGTCACCTCCACCTCCGAAGCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

649

Amino Acids

69.32

Weight (kDa)

9.75

Isoelectric Point (pI)

174.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1912
Acc16I TGCGCA 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 1912
AciI CCGC 4 cut(s) 533, 1394, 1514, 1805
AfaI GTAC 5 cut(s) 521, 905, 1193, 1241, 1385
AgsI TTSAA 1 cut(s) 1888
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 1 cut(s) 1869
AluI AGCT 1 cut(s) 1869
Alw26I GTCTC 5 cut(s) 195, 579, 963, 1251, 1896
AoxI GGCC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 169
BcoDI GTCTC 5 cut(s) 195, 579, 963, 1251, 1896
BfmI CTRYAG 3 cut(s) 856, 1864, 1915
BfuAI ACCTGC 1 cut(s) 1912
BisI GCNGC 1 cut(s) 1394
BlsI GCNGC 1 cut(s) 1395
BsaJI CCNNGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 974
BshFI GGCC 1 cut(s) 31
BslFI GGGAC 3 cut(s) 751, 1807, 1828
BsmAI GTCTC 5 cut(s) 195, 579, 963, 1251, 1896
BsmFI GGGAC 3 cut(s) 751, 1807, 1828
BsnI GGCC 1 cut(s) 31
Bsp1407I TGTACA 5 cut(s) 519, 903, 1191, 1239, 1383
BspACI CCGC 4 cut(s) 533, 1394, 1514, 1805
BspANI GGCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 1912
BsrGI TGTACA 5 cut(s) 519, 903, 1191, 1239, 1383
BssECI CCNNGG 1 cut(s) 20
BssNAI GTATAC 1 cut(s) 1528
Bst1107I GTATAC 1 cut(s) 1528
Bst4CI ACNGT 2 cut(s) 182, 1740
BstAUI TGTACA 5 cut(s) 519, 903, 1191, 1239, 1383
BstC8I GCNNGC 1 cut(s) 81
BstEII GGTNACC 2 cut(s) 861, 1920
BstF5I GGATG 1 cut(s) 974
BstHHI GCGC 1 cut(s) 169
BstMAI GTCTC 5 cut(s) 195, 579, 963, 1251, 1896
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstPI GGTNACC 2 cut(s) 861, 1920
BstSFI CTRYAG 3 cut(s) 856, 1864, 1915
BstZ17I GTATAC 1 cut(s) 1528
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 974
BveI ACCTGC 1 cut(s) 1912
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 169
Csp6I GTAC 5 cut(s) 520, 904, 1192, 1240, 1384
CviJI RGCY 6 cut(s) 8, 19, 31, 68, 91, 1869
CviKI_1 RGCY 6 cut(s) 8, 19, 31, 68, 91, 1869
CviQI GTAC 5 cut(s) 520, 904, 1192, 1240, 1384
EciI GGCGGA 1 cut(s) 1503
Eco91I GGTNACC 2 cut(s) 861, 1920
EcoO65I GGTNACC 2 cut(s) 861, 1920
FaqI GGGAC 3 cut(s) 751, 1807, 1828
FauNDI CATATG 7 cut(s) 226, 466, 610, 754, 850, 994, 1282
Fnu4HI GCNGC 1 cut(s) 1394
FokI GGATG 1 cut(s) 961
Fsp4HI GCNGC 1 cut(s) 1394
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 1394
HaeIII GGCC 1 cut(s) 31
HhaI GCGC 1 cut(s) 169
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 1935
HpyCH4III ACNGT 2 cut(s) 182, 1740
HpyCH4V TGCA 1 cut(s) 1907
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HspAI GCGC 1 cut(s) 167
LpnPI CCDG 4 cut(s) 844, 1800, 1903, 1917
MboII GAAGA 1 cut(s) 96
MluCI AATT 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeI CATATG 7 cut(s) 226, 466, 610, 754, 850, 994, 1282
NmeAIII GCCGAG 1 cut(s) 45
NsbI TGCGCA 1 cut(s) 168
OliI CACNNNNGTG 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 1912
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PkrI GCNGC 1 cut(s) 1395
PspEI GGTNACC 2 cut(s) 861, 1920
RsaI GTAC 5 cut(s) 521, 905, 1193, 1241, 1385
RsaNI GTAC 5 cut(s) 520, 904, 1192, 1240, 1384
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 1394
SfcI CTRYAG 3 cut(s) 856, 1864, 1915
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 142
SsiI CCGC 4 cut(s) 533, 1394, 1514, 1805
TaaI ACNGT 2 cut(s) 182, 1740
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 142
TatI WGTACW 5 cut(s) 519, 903, 1191, 1239, 1383
TauI GCSGC 1 cut(s) 1396
TspGWI ACGGA 2 cut(s) 672, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.