Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004531

Physical Location & Seq

Genomic Coordinates Reverse (-)

22391286 .. 22392910

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGATAAGCTTGTGCCCTAGCCACTGTTCCAACCACTGGTGGTGTGCAACGTTCTTCCATCTTGATATTTATCATATCCAGATCCAGAATCCCAGATTTCCTTATTCGCCCGTTCATCTTCGACCCCCTTATCTTGAAGCTTTGCAGCAACCGTTGGTACTGGGCACCTATCAACCTTCAGTTGTGGCCATAGGGATTGAGAAATCTCTTCCGTCAAGACGAACCTATTACATATTGCTGTTGAAGTCTAAAACCCTAAGAAGTCTAAAACTCTCTCTCTCTCTCGAGGACACAAGGGTTGCGACGGCAAGGCACCACCACATCTCGTCCGGTGGCTTTCTGGCGTCGCCTCGACTTCGTGGGGATGCTGCCAGATGGGCAACATATGGTTTAGACCTCTGGAATCTCTTTGCCTGCGGTGTGGCAGTTGTAGCTGGGCTTATTTGGATCGAGATGGCTTTGGGGCTGGAGGTTTTGTGGGCCGGTTTCAAGGAAGGTGACGACGGAGGCACAGTTTCGCTCCAGACAACGACGACCTTTACGGCCACCATTGATGGGGTTGGCGGCTTCGATGCAGAGACCCTTACCTGTTTCGGGTTGGGGTCGACATGTGTTGCAGTTCGTCCTTCGTCTAGGTGGTGGTGCAAGATGGTTGGGCGACTGAACGGCGCAGTGGCGTCGGTGAAGGGTCACAGCCGCTGCTGGTGGTTTGCGGAGCATGAAAGCCTTTGGGCTGTGGAGAGAAGATGGGCTGGGCTTAACTGTTGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.64

Weight (kDa)

8.76

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09800
prunus_persica	Prupe.4G245400_v2.0.a1 Prupe.4G245500_v2.0.a1
pyrus_communis	pycom03g13480
rosa_chinensis	RchiOBHm_Chr5g0051641 RchiOBHm_Chr5g0051651
rosa_laevigata	RLG00000006362 RLG00000012790 RLG00000014729 RLG00000034869 RLG00000037111
rosa_multiflora	Rmu_sc0014445.1_g000009 Rmu_ssc0000089.1_g000031 Rmu_ssc0000089.1_g000033
rosa_roxburghii	Rroxscaffold_1G00027110 Rroxscaffold_1G00027130 Rroxscaffold_1G00027160
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh5AG349900 Rh5BG361600 Rh5BG361700 Rh5CG386200 Rh5CG386300 Rh5CG386400 Rh5CG386500 Rh5DG376500 Rh5DG376600 Rh7DG483600
rosa_wichuraiana	Rw0G013450 Rw0G013460 Rw5G033080 Rw5G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 312
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	605
AciI	CCGC	4 cut(s)	417, 564, 697, 713
AclI	AACGTT	1 cut(s)	50
AclWI	GGATC	2 cut(s)	76, 455
AcoI	YGGCCR	2 cut(s)	186, 543
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	344, 677
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	3 cut(s)	36, 555, 594
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	3 cut(s)	137, 244, 490
AluBI	AGCT	3 cut(s)	9, 140, 434
AluI	AGCT	3 cut(s)	9, 140, 434
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	76, 455
AlwNI	CAGNNNCTG	1 cut(s)	699
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	4 cut(s)	186, 480, 543, 768
ApeKI	GCWGC	3 cut(s)	145, 368, 699
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	2 cut(s)	480, 768
AsuHPI	GGTGA	2 cut(s)	509, 694
AvaI	CYCGRG	1 cut(s)	284
BaeGI	GKGCMC	2 cut(s)	17, 167
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	164, 312
BbvI	GCAGC	3 cut(s)	157, 355, 686
BccI	CCATC	6 cut(s)	66, 369, 448, 548, 643, 741
BceAI	ACGGC	3 cut(s)	321, 558, 682
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	3 cut(s)	18, 633, 772
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	146, 369, 565, 697, 700
BlsI	GCNGC	5 cut(s)	147, 370, 566, 698, 701
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	480, 768
BmiI	GGNNCC	2 cut(s)	166, 314
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	355, 562
BmuI	ACTGGG	1 cut(s)	170
BpmI	CTGGAG	2 cut(s)	488, 506
BsaBI	GATNNNNATC	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	344, 677
BsaI	GGTCTC	1 cut(s)	572
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	4 cut(s)	461, 491, 498, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 555, 594
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	41, 165
Bse8I	GATNNNNATC	1 cut(s)	69
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	36, 555, 594
BseNI	ACTGG	2 cut(s)	41, 165
BseSI	GKGCMC	2 cut(s)	17, 167
BseXI	GCAGC	3 cut(s)	157, 355, 686
BseYI	CCCAGC	2 cut(s)	434, 752
BshFI	GGCC	4 cut(s)	188, 482, 545, 770
BshNI	GGYRCC	2 cut(s)	164, 312
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	330, 483
BslI	CCNNNNNNNGG	3 cut(s)	36, 555, 594
BsmAI	GTCTC	1 cut(s)	572
BsnI	GGCC	4 cut(s)	188, 482, 545, 770
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	17, 167
Bsp143I	GATC	2 cut(s)	81, 447
BspACI	CCGC	4 cut(s)	417, 564, 697, 713
BspANI	GGCC	4 cut(s)	188, 482, 545, 770
BspLI	GGNNCC	2 cut(s)	166, 314
BspPI	GGATC	2 cut(s)	76, 455
BspT107I	GGYRCC	2 cut(s)	164, 312
BspTNI	GGTCTC	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	41, 165
BssAI	RCCGGY	1 cut(s)	482
BssMI	GATC	2 cut(s)	81, 447
BssNI	GRCGYC	2 cut(s)	344, 677
Bst4CI	ACNGT	4 cut(s)	26, 153, 514, 764
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	2 cut(s)	344, 677
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	2 cut(s)	84, 450
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	2 cut(s)	81, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 431
BstNSI	RCATGY	1 cut(s)	612
BstSLI	GKGCMC	2 cut(s)	17, 167
BstV1I	GCAGC	3 cut(s)	157, 355, 686
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	188, 482, 545, 770
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	3 cut(s)	22, 34, 678
Cac8I	GCNNGC	1 cut(s)	415
CaiI	CAGNNNCTG	1 cut(s)	699
CfoI	GCGC	1 cut(s)	671
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	480, 768
CseI	GACGC	2 cut(s)	333, 666
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	609, 719
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	2 cut(s)	83, 449
DpnII	GATC	2 cut(s)	81, 447
EaeI	YGGCCR	2 cut(s)	186, 543
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	284
FaeI	CATG	2 cut(s)	612, 722
FaiI	YATR	7 cut(s)	75, 191, 233, 385, 387, 610, 720
FatI	CATG	2 cut(s)	608, 718
FauNDI	CATATG	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	5 cut(s)	146, 369, 565, 697, 700
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	5 cut(s)	146, 369, 565, 697, 700
FspBI	CTAG	3 cut(s)	18, 633, 772
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	5 cut(s)	146, 369, 565, 697, 700
GsaI	CCCAGC	2 cut(s)	438, 756
GsuI	CTGGAG	2 cut(s)	488, 506
HaeIII	GGCC	4 cut(s)	188, 482, 545, 770
HapII	CCGG	2 cut(s)	330, 483
HgaI	GACGC	2 cut(s)	333, 666
HhaI	GCGC	1 cut(s)	671
Hin1I	GRCGYC	2 cut(s)	344, 677
Hin1II	CATG	2 cut(s)	612, 722
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	2 cut(s)	7, 138
HinfI	GANTC	2 cut(s)	88, 403
HpaII	CCGG	2 cut(s)	330, 483
HphI	GGTGA	2 cut(s)	509, 694
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188III	TCNNGA	9 cut(s)	62, 79, 85, 134, 216, 284, 400, 451, 523
Hpy8I	GTNNAC	1 cut(s)	606
Hpy99I	CGWCG	5 cut(s)	307, 349, 506, 535, 682
HpyAV	CCTTC	4 cut(s)	186, 488, 636, 679
HpyCH4III	ACNGT	4 cut(s)	26, 153, 514, 764
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	5 cut(s)	47, 145, 575, 617, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 431
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	2 cut(s)	344, 677
Hsp92II	CATG	2 cut(s)	612, 722
HspAI	GCGC	1 cut(s)	669
Kzo9I	GATC	2 cut(s)	81, 447
LmnI	GCTCC	2 cut(s)	525, 715
Lsp1109I	GCAGC	3 cut(s)	157, 355, 686
LweI	GCATC	2 cut(s)	355, 562
MaeI	CTAG	3 cut(s)	18, 633, 772
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	497, 689
MalI	GATC	2 cut(s)	83, 449
MboI	GATC	2 cut(s)	81, 447
MboII	GAAGA	4 cut(s)	46, 110, 200, 756
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	17, 167
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	280, 360, 407, 463, 500
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	759
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	699
MspI	CCGG	2 cut(s)	330, 483
MwoI	GCNNNNNNNGC	2 cut(s)	377, 431
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	2 cut(s)	81, 447
NlaIII	CATG	2 cut(s)	612, 722
NlaIV	GGNNCC	2 cut(s)	166, 314
NmuCI	GTSAC	2 cut(s)	497, 689
NspI	RCATGY	1 cut(s)	612
PaeR7I	CTCGAG	1 cut(s)	284
PciI	ACATGT	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	88, 403
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	147, 370, 566, 698, 701
PscI	ACATGT	1 cut(s)	608
Psp1406I	AACGTT	1 cut(s)	50
PspFI	CCCAGC	2 cut(s)	434, 752
PspN4I	GGNNCC	2 cut(s)	166, 314
PspPI	GGNCC	2 cut(s)	480, 768
PstNI	CAGNNNCTG	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	604
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	5 cut(s)	146, 369, 565, 697, 700
Sau3AI	GATC	2 cut(s)	81, 447
Sau96I	GGNCC	2 cut(s)	480, 768
SduI	GDGCHC	2 cut(s)	17, 167
SfaNI	GCATC	2 cut(s)	355, 562
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SsiI	CCGC	4 cut(s)	417, 564, 697, 713
SspMI	CTAG	3 cut(s)	18, 633, 772
TaaI	ACNGT	4 cut(s)	26, 153, 514, 764
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	6 cut(s)	121, 285, 352, 450, 570, 605
TauI	GCSGC	2 cut(s)	567, 699
TfiI	GAWTC	2 cut(s)	88, 403
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	3 cut(s)	29, 41, 678
TseFI	GTSAC	2 cut(s)	497, 689
TseI	GCWGC	3 cut(s)	145, 368, 699
Tsp45I	GTSAC	2 cut(s)	497, 689
TspDTI	ATGAA	2 cut(s)	104, 735
TspGWI	ACGGA	2 cut(s)	201, 519
TspRI	CASTG	3 cut(s)	29, 41, 678
Van91I	CCANNNNNTGG	1 cut(s)	36
XceI	RCATGY	1 cut(s)	612
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	605
XspI	CTAG	3 cut(s)	18, 633, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.