Rh5AG349900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004531
Physical Location & Seq
Reverse (-)
57998532 .. 58003278
4747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG349900.1

Sequence Viewer

Length: 441 bp
ATGGGAGCCTTGGGACAGCCAAGGCCTTATTGGCTCATTTCAGTGTTTTATGGCTTGGCATTGTGCTTCTTAGCTAGTACTACTGTTCTTGCTAACAATCCTTACACTTATTCTTCACCACCACCTCCTCACCATGCCCCTCAATACCCTCCTCCCAAGTATCAATCACCACCACCAAAATATCCTGAGCACCCTCCACACCATTACAAGTCACCACCACCCCCGCCACCGCCGAAGCATGTGATACATCCTCCGTATCACTACAAGTCTCCCCCGCCACCCTCACCTTCACCTCCACCTCCTTATGTCTACAAGTCTCCACCACCCCCGTCACCTTCACCGCCACCTCCATATTATTGTTTCTCTTACCAAAACAAAAGGTGTTCACTAATGAATGATTATAAGGTCTTGATTGATCTTTTTTATTATATCCAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.61

Weight (kDa)

9.15

Isoelectric Point (pI)

104.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AccI GTMKAC 1 cut(s) 309
AciI CCGC 4 cut(s) 224, 230, 275, 341
AfaI GTAC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 273, 321
AoxI GGCC 1 cut(s) 23
AsuHPI GGTGA 8 cut(s) 108, 122, 159, 204, 276, 282, 324, 330
Bbv12I GWGCWC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 273, 321
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 9, 20
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 9, 20
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 117, 141
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 27
BsmAI GTCTC 2 cut(s) 273, 321
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 415
BspACI CCGC 4 cut(s) 224, 230, 275, 341
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 9, 20
BssMI GATC 1 cut(s) 415
BssT1I CCWWGG 2 cut(s) 9, 20
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 70, 186
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 2 cut(s) 273, 321
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 432
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 134, 239
CviJI RGCY 6 cut(s) 8, 19, 25, 34, 54, 74
CviKI_1 RGCY 6 cut(s) 8, 19, 25, 34, 54, 74
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 70, 186
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 9, 20
ErhI CCWWGG 2 cut(s) 9, 20
FaeI CATG 2 cut(s) 137, 242
FaiI YATR 7 cut(s) 51, 135, 240, 306, 352, 402, 429
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 133, 238
FauI CCCGC 2 cut(s) 231, 282
FblI GTMKAC 1 cut(s) 309
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 2 cut(s) 137, 242
HphI GGTGA 8 cut(s) 108, 122, 159, 204, 276, 282, 324, 330
Hpy166II GTNNAC 2 cut(s) 310, 386
Hpy188III TCNNGA 2 cut(s) 185, 409
Hpy8I GTNNAC 2 cut(s) 310, 386
HpyAV CCTTC 2 cut(s) 297, 345
HpyCH4III ACNGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 70, 186
Hsp92II CATG 2 cut(s) 137, 242
Kzo9I GATC 1 cut(s) 415
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 2 cut(s) 198, 419
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 210, 330
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 1 cut(s) 415
NlaIII CATG 2 cut(s) 137, 242
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 210, 330
NspI RCATGY 1 cut(s) 242
PceI AGGCCT 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 432
PsiI TTATAA 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 41
Sau3AI GATC 1 cut(s) 415
ScaI AGTACT 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 192
SetI ASST 9 cut(s) 76, 127, 289, 295, 301, 337, 349, 383, 408
SmiMI CAYNNNNRTG 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 4 cut(s) 224, 230, 275, 341
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 2 cut(s) 9, 20
TaaI ACNGT 1 cut(s) 85
TatI WGTACW 1 cut(s) 77
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 210, 330
Tsp45I GTSAC 2 cut(s) 210, 330
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.