Rw5G033110

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
56165490 .. 56166530
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033110.1

Sequence Viewer

Length: 1041 bp
ATGGGAGCCTTGGGACAGCCAAGGCCTTATTGGCTCATTTCAGTGTTTTATGGTTTGGCATTGTGCTTCTTAGCAAGTCCTACTGTTCTTGCTACTTTCACTTTTATTCCACCACTATTTCCTCTATTCCCTCTTCCGAAGCATCAATTACCACCACCAAATTATCCTAATTACCCTCCACATCATTACAAGTCACCACCACCCCCGCCACCTCCATCACCTTCACCACCACCCCCGCCACTCCCATCACCTTCACCTCCTCCTCCCTATGTCTATAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCATATGTATACAAGTCTCCACCACCCCCATCACCTTCACCACCACCTCCCTATCTTTTCAAGTCTCCACCACCCCCGTCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTCACCTCCTTCTCCCTATGTCTATAAGTCTCCTCCACCCCCATCACCTTCACCGCCACCTCCATATGTATACAAGTCTCCACCACCCCCATCACCTTCACCACCACCTCCCTATCTTTACAAGTCTCCACCACCCCCGTCACCTTCACCTCCTCCTCCCTATGTCTACAAGTCTCCTCCACCCCCATCACCTTTACCGCCACCTCCCTATGTCTACAATTCGCCACCACCCCTATCACCTTCACCTCCTCCTCCGTATGTTTACAAGTCTCCACCACCCCCATCACCTTCACCACCACCGCCATACATTTATAAATCACCACCACCGCAATCTGCGTCACCACCTCCTCCTTATGTTTACAAGTCTCCACCACCACCATCTCCATCACCTCCTCCTCCTTACGTCTACAAGTCTCCACCCCCACCATCACCCTCACCACCTCCACCTTCCCCATCACCGCCACCTCCATATGTCTATAAGTCTCCCCCTCCACCATCTCGCTCACCTCCTCCCCCTTATCTCTACAAGTCTCCTCCTCCCCCATCTCACTCTCCTCCACCATACTACAAGTCCCCTCCACCTCCAAAGCCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

36.99

Weight (kDa)

9.7

Isoelectric Point (pI)

160.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AccI GTMKAC 6 cut(s) 321, 417, 513, 609, 657, 849
AciI CCGC 8 cut(s) 206, 236, 305, 497, 641, 743, 770, 902
AgsI TTSAA 1 cut(s) 373
AoxI GGCC 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 9, 20
BseDI CCNNGG 2 cut(s) 9, 20
BshFI GGCC 1 cut(s) 25
BslFI GGGAC 2 cut(s) 27, 1000
BsmFI GGGAC 2 cut(s) 27, 1000
BsnI GGCC 1 cut(s) 25
BspACI CCGC 8 cut(s) 206, 236, 305, 497, 641, 743, 770, 902
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 9, 20
BssNAI GTATAC 2 cut(s) 322, 514
BssT1I CCWWGG 2 cut(s) 9, 20
Bst1107I GTATAC 2 cut(s) 322, 514
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstZ17I GTATAC 2 cut(s) 322, 514
BsuRI GGCC 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 48
CseI GACGC 1 cut(s) 768
CviJI RGCY 5 cut(s) 8, 19, 25, 34, 1033
CviKI_1 RGCY 5 cut(s) 8, 19, 25, 34, 1033
DdeI CTNAG 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 9, 20
ErhI CCWWGG 2 cut(s) 9, 20
FaqI GGGAC 2 cut(s) 27, 1000
FauI CCCGC 2 cut(s) 213, 243
FauNDI CATATG 3 cut(s) 316, 508, 913
FblI GTMKAC 6 cut(s) 321, 417, 513, 609, 657, 849
HaeIII GGCC 1 cut(s) 25
HgaI GACGC 1 cut(s) 768
Hpy166II GTNNAC 8 cut(s) 322, 418, 514, 610, 658, 706, 802, 850
Hpy188I TCNGA 1 cut(s) 138
Hpy8I GTNNAC 8 cut(s) 322, 418, 514, 610, 658, 706, 802, 850
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 846
LmnI GCTCC 1 cut(s) 5
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 4 cut(s) 192, 390, 582, 780
MboII GAAGA 1 cut(s) 125
MluCI AATT 4 cut(s) 146, 160, 169, 661
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 3 cut(s) 316, 508, 913
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 4 cut(s) 192, 390, 582, 780
PceI AGGCCT 1 cut(s) 25
PsiI TTATAA 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 41
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 4 cut(s) 146, 160, 169, 661
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 8 cut(s) 206, 236, 305, 497, 641, 743, 770, 902
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 2 cut(s) 9, 20
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 849
TasI AATT 4 cut(s) 146, 160, 169, 661
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 4 cut(s) 192, 390, 582, 780
Tsp45I GTSAC 4 cut(s) 192, 390, 582, 780
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmiI GTMKAC 6 cut(s) 321, 417, 513, 609, 657, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.