Rmu_ssc0000089.1_g000033

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000089.1
Physical Location & Seq
Reverse (-)
227837 .. 229081
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000089.1_g000033.1.cds

Sequence Viewer

Length: 1245 bp
atgggagccttgggacagccaaggccttattggctcatttcagtgttttatggtttggcattgtgcttcttatcaagtactactgttcttgctaacaatcctttcagtttttttccaccactatttcctctattccctcctccgaagtatcaattaccaccaccaaattatcctaattaccctccacagcattacaagtcaccaccacccccgccacctccatcaccttcaccaccacctccctatatttacaagtctccaccacccccatcacgttcacctcctcctccctatgtctataagtctcctccacccccatcaccttcaccgccacctccatatgtatacaagtctccaccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacctcctcctccctatgtctacaagtctcctccacccccatcaccttcacatgtttacaagtctccaccacccccatcaccttcaccaccaccgccatacatttataaatcaccaccaccgcaatctgcgtcaccacctcctccttatgtttacaagtctccaccaccaccatctccatcacctcctcctccttacgtctacaagtctccacccccaccatcaccctcaccacctccaccttccccatcaccgccacctccatatgtctataagtctccccctccaccatctccctcacctcctcccccttatctctacaagtctcctcctcccccatctcactctcctccaccatactacaagtcccctccacctccaaagccctactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

44.38

Weight (kDa)

9.7

Isoelectric Point (pI)

163.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AciI CCGC 5 cut(s) 212, 329, 947, 974, 1106
AfaI GTAC 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 904
AoxI GGCC 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 9, 20
BseDI CCNNGG 2 cut(s) 9, 20
BshFI GGCC 1 cut(s) 25
BslFI GGGAC 2 cut(s) 27, 1204
BsmFI GGGAC 2 cut(s) 27, 1204
BsnI GGCC 1 cut(s) 25
BspACI CCGC 5 cut(s) 212, 329, 947, 974, 1106
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 9, 20
BssNAI GTATAC 1 cut(s) 346
BssT1I CCWWGG 2 cut(s) 9, 20
Bst1107I GTATAC 1 cut(s) 346
Bst4CI ACNGT 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 908
BstZ17I GTATAC 1 cut(s) 346
BsuRI GGCC 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 48
CseI GACGC 1 cut(s) 972
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 905
CviJI RGCY 5 cut(s) 8, 19, 25, 34, 1237
CviKI_1 RGCY 5 cut(s) 8, 19, 25, 34, 1237
CviQI GTAC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 9, 20
ErhI CCWWGG 2 cut(s) 9, 20
FaeI CATG 1 cut(s) 908
FaqI GGGAC 2 cut(s) 27, 1204
FatI CATG 1 cut(s) 904
FauI CCCGC 1 cut(s) 219
FauNDI CATATG 2 cut(s) 340, 1117
HaeIII GGCC 1 cut(s) 25
HgaI GACGC 1 cut(s) 972
Hin1II CATG 1 cut(s) 908
Hpy188I TCNGA 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 274, 1050
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 274, 1050
Hsp92II CATG 1 cut(s) 908
LmnI GCTCC 1 cut(s) 5
MaeII ACGT 2 cut(s) 274, 1050
MaeIII GTNAC 2 cut(s) 198, 984
MluCI AATT 3 cut(s) 152, 166, 175
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 2 cut(s) 340, 1117
NlaIII CATG 1 cut(s) 908
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 198, 984
NspI RCATGY 1 cut(s) 908
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 904
PscI ACATGT 1 cut(s) 904
PsiI TTATAA 1 cut(s) 960
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 41
ScaI AGTACT 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 3 cut(s) 152, 166, 175
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 5 cut(s) 212, 329, 947, 974, 1106
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 2 cut(s) 9, 20
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 277, 1053
TasI AATT 3 cut(s) 152, 166, 175
TatI WGTACW 1 cut(s) 77
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 198, 984
Tsp45I GTSAC 2 cut(s) 198, 984
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.