Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004531

Physical Location & Seq

Genomic Coordinates Forward (+)

34132350 .. 34134549

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGGAGCCTTGGGACAGCCAAGGCCTTATTGGCTCATTTCAGTGTTTTATGGTTTGGCATTGTGCTTCTTAGCAAGTACTACTGTTCTTGCTAACAATGCTGACACTTTCTTTCCACCACTATTTCCTCTATTCCCTCTTCCCAATTATCAATTACCACCACCAAATTATCCTCACCACCCTCCACAGCATTACAATTCACCACCACCCCCGCCACCGCCAGAGCATGTGATACATCCTCCGTATCACAACAAGTCTCCCCCGCCACCCTCACCTTCACCTTCACCTCCACCTCCTTATGTCTACAAGTCACCACCACCCCCATCACCTTCACCGCCACCCCCATCACCTTCACCCCCACCCCCATCACCTTCACCGCCACCCCCATCACCTTCACCGCCACCCCCATCACCTTCACCCCCACCCCCATCAGCTTCACCCCCACCCCCATCAGCTTCACCGCCACCCCCATCACCTTCACCGCCACCCCCATCACCTTCACCGCCACCCCCATCACCTTCACCGCCACCTCCCTATATTTACAAGTCTCCACCACCCCCATCACCTTCACCGCCACCGCCCTATGTCTACAAGTCTCCACCACCCCCATCACCTTCACCTCCTCCTCCGTATGTTTACAAGTCTCCACCACCACCACCACCACCCCCATCACCTTCACCACCACCGCCATACATTTATAAATCACCACCACCACCATCTCCGTCACCACCTCCTCCTTATGTTTACAAGTCTCCACCACCACCATCTCCATCACCTCCTCCTCCTTACGTCTACAAGTCTCCACCCCCACCATCACCCTCACCACCTCCACCATACGTATACAAGTCCCCGCCACCTCCTTCTCCATCTCCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCATCTCCGCCACCTCCTTATGTTTACAAATCTCCACCACCACCTTCTCCGTCACCGCCTCCACCATACGTCTACAAGTCCCCACCTCCTCCATCTCCATCACCGCCTCCTCCTTACGTCCAGAAGTCACCACCACCTCCTTCCCCATCGCCTCCTCCTCCCTATATTTATAAGTCACCTCCACCACCCTCACTGTCACCTCCTCCTCCTTATGTATACAAGTCCCCACCTCCACCTTCCCCATCACCGCCACCTCCATATGTCTATAAGTCTCCCCCTCCACCATCTCCCCCACCTCCTCCCCCTTATCTCTACAAGTCTCCTCCTCCCCCATCTCACTCTCCTCCACCATACTACTACAAGTCCCCTCCACCCCCAAAGAGATCTGTGCACCCCAGGTTGAAGAGTTTTGTTACATTACTGATAACACATATTTCAAGGAAGAGGGTTTTGGAAATGGAATCTTCTGTTTTGAATTACTTGAAGTTTGAAATGACAGCCGCAACAACTAAATATTTCTTAAGGCGATTTGTTCGTGCTGCTCGATGGGCCAATGAGCTTCCATCAATGCAGTTGGAGTGCTTGGCAAACTACCTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

504

Amino Acids

54.03

Weight (kDa)

9.71

Isoelectric Point (pI)

155.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09800
prunus_persica	Prupe.4G245400_v2.0.a1 Prupe.4G245500_v2.0.a1
pyrus_communis	pycom03g13480
rosa_chinensis	RchiOBHm_Chr5g0051641 RchiOBHm_Chr5g0051651
rosa_laevigata	RLG00000006362 RLG00000012790 RLG00000014729 RLG00000034869 RLG00000037111
rosa_multiflora	Rmu_sc0014445.1_g000009 Rmu_ssc0000089.1_g000031 Rmu_ssc0000089.1_g000033
rosa_roxburghii	Rroxscaffold_1G00027110 Rroxscaffold_1G00027130 Rroxscaffold_1G00027160
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh5AG349900 Rh5BG361600 Rh5BG361700 Rh5CG386200 Rh5CG386300 Rh5CG386400 Rh5CG386500 Rh5DG376500 Rh5DG376600 Rh7DG483600
rosa_wichuraiana	Rw0G013450 Rw0G013460 Rw5G033080 Rw5G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	699, 1083
AccI	GTMKAC	6 cut(s)	303, 588, 792, 840, 984, 1128
AfaI	GTAC	1 cut(s)	79
AflII	CTTAAG	1 cut(s)	1432
AgsI	TTSAA	5 cut(s)	1315, 1350, 1387, 1396, 1403
AjnI	CCWGG	1 cut(s)	1307
AjuI	GAANNNNNNNTTGG	2 cut(s)	1346, 1378
AluBI	AGCT	3 cut(s)	434, 455, 1471
AluI	AGCT	3 cut(s)	434, 455, 1471
Alw21I	GWGCWC	1 cut(s)	1305
Alw26I	GTCTC	8 cut(s)	261, 552, 600, 648, 756, 804, 1188, 1236
Alw44I	GTGCAC	1 cut(s)	1301
AoxI	GGCC	2 cut(s)	23, 1461
ApaLI	GTGCAC	1 cut(s)	1301
ApeKI	GCWGC	1 cut(s)	1451
AspS9I	GGNCC	1 cut(s)	1461
BaeGI	GKGCMC	1 cut(s)	1305
Bbv12I	GWGCWC	1 cut(s)	1305
BbvI	GCAGC	1 cut(s)	1438
BciT130I	CCWGG	1 cut(s)	1309
BcoDI	GTCTC	8 cut(s)	261, 552, 600, 648, 756, 804, 1188, 1236
BfrI	CTTAAG	1 cut(s)	1432
BglI	GCCNNNNNGGC	1 cut(s)	31
BglII	AGATCT	1 cut(s)	1295
BisI	GCNGC	2 cut(s)	1413, 1452
BlsI	GCNGC	2 cut(s)	1414, 1453
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	1309
BmgT120I	GGNCC	1 cut(s)	1461
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	1309
BsaAI	YACGTR	1 cut(s)	838
BsaJI	CCNNGG	3 cut(s)	9, 20, 1307
BseBI	CCWGG	1 cut(s)	1309
BseDI	CCNNGG	3 cut(s)	9, 20, 1307
BseGI	GGATG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	1305
BseXI	GCAGC	1 cut(s)	1438
BshFI	GGCC	2 cut(s)	25, 1463
BsiHKAI	GWGCWC	1 cut(s)	1305
BslFI	GGGAC	5 cut(s)	27, 832, 976, 1120, 1261
BsmAI	GTCTC	8 cut(s)	261, 552, 600, 648, 756, 804, 1188, 1236
BsmFI	GGGAC	5 cut(s)	27, 832, 976, 1120, 1261
BsnI	GGCC	2 cut(s)	25, 1463
Bsp1286I	GDGCHC	1 cut(s)	1305
Bsp143I	GATC	1 cut(s)	1295
BspANI	GGCC	2 cut(s)	25, 1463
BspLI	GGNNCC	1 cut(s)	7
BspTI	CTTAAG	1 cut(s)	1432
BssECI	CCNNGG	3 cut(s)	9, 20, 1307
BssMI	GATC	1 cut(s)	1295
BssNAI	GTATAC	2 cut(s)	841, 1129
BssT1I	CCWWGG	2 cut(s)	9, 20
Bst1107I	GTATAC	2 cut(s)	841, 1129
Bst2UI	CCWGG	1 cut(s)	1309
Bst4CI	ACNGT	2 cut(s)	85, 1107
Bst6I	CTCTTC	3 cut(s)	144, 1310, 1349
BstAFI	CTTAAG	1 cut(s)	1432
BstBAI	YACGTR	1 cut(s)	838
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	1298
BstMAI	GTCTC	8 cut(s)	261, 552, 600, 648, 756, 804, 1188, 1236
BstMBI	GATC	1 cut(s)	1295
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 98, 1460
BstNI	CCWGG	1 cut(s)	1309
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	1307
BstSLI	GKGCMC	1 cut(s)	1305
BstSNI	TACGTA	1 cut(s)	838
BstV1I	GCAGC	1 cut(s)	1438
BstX2I	RGATCY	1 cut(s)	1295
BstYI	RGATCY	1 cut(s)	1295
BstZ17I	GTATAC	2 cut(s)	841, 1129
BsuRI	GGCC	2 cut(s)	25, 1463
BtgZI	GCGATG	1 cut(s)	1044
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	48, 1103
Cfr13I	GGNCC	1 cut(s)	1461
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	9 cut(s)	8, 19, 25, 34, 434, 455, 1412, 1463, 1471
CviKI_1	RGCY	9 cut(s)	8, 19, 25, 34, 434, 455, 1412, 1463, 1471
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	1 cut(s)	1297
DpnII	GATC	1 cut(s)	1295
Eam1104I	CTCTTC	3 cut(s)	144, 1310, 1349
EarI	CTCTTC	3 cut(s)	144, 1310, 1349
EciI	GGCGGA	2 cut(s)	861, 909
Eco105I	TACGTA	1 cut(s)	838
Eco130I	CCWWGG	2 cut(s)	9, 20
Eco147I	AGGCCT	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	1307
EcoT14I	CCWWGG	2 cut(s)	9, 20
ErhI	CCWWGG	2 cut(s)	9, 20
FaeI	CATG	1 cut(s)	230
FaqI	GGGAC	5 cut(s)	27, 832, 976, 1120, 1261
FatI	CATG	1 cut(s)	226
FauI	CCCGC	3 cut(s)	219, 270, 858
FauNDI	CATATG	1 cut(s)	1171
FblI	GTMKAC	6 cut(s)	303, 588, 792, 840, 984, 1128
Fnu4HI	GCNGC	2 cut(s)	1413, 1452
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	1413, 1452
GluI	GCNGC	2 cut(s)	1413, 1452
HaeIII	GGCC	2 cut(s)	25, 1463
Hin1II	CATG	1 cut(s)	230
HinfI	GANTC	1 cut(s)	1373
Hpy188III	TCNNGA	1 cut(s)	1033
HpyCH4III	ACNGT	2 cut(s)	85, 1107
HpyCH4IV	ACGT	4 cut(s)	789, 837, 981, 1029
HpyCH4V	TGCA	3 cut(s)	1303, 1483, 1511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 98, 1460
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	4 cut(s)	789, 837, 981, 1029
Hsp92II	CATG	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	1295
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	4 cut(s)	234, 1046, 1294, 1321
Lsp1109I	GCAGC	1 cut(s)	1438
MaeII	ACGT	4 cut(s)	789, 837, 981, 1029
MaeIII	GTNAC	7 cut(s)	309, 723, 963, 1038, 1086, 1107, 1324
MalI	GATC	1 cut(s)	1297
MboI	GATC	1 cut(s)	1295
MboII	GAAGA	4 cut(s)	131, 1327, 1366, 1368
MflI	RGATCY	1 cut(s)	1295
MhlI	GDGCHC	1 cut(s)	1305
MluCI	AATT	5 cut(s)	145, 152, 166, 196, 1387
MmeI	TCCRAC	1 cut(s)	1467
MseI	TTAA	1 cut(s)	1433
MslI	CAYNNNNRTG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	1432
MspR9I	CCNGG	1 cut(s)	1309
MvaI	CCWGG	1 cut(s)	1309
MwoI	GCNNNNNNNGC	3 cut(s)	31, 98, 1460
NdeI	CATATG	1 cut(s)	1171
NdeII	GATC	1 cut(s)	1295
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	6 cut(s)	309, 723, 963, 1038, 1086, 1107
NspI	RCATGY	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	1453
PfeI	GAWTC	1 cut(s)	1373
PkrI	GCNGC	2 cut(s)	1414, 1453
Ppu21I	YACGTR	1 cut(s)	838
PsiI	TTATAA	2 cut(s)	699, 1083
Psp6I	CCWGG	1 cut(s)	1307
PspGI	CCWGG	1 cut(s)	1307
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	1461
PsuI	RGATCY	1 cut(s)	1295
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	1433
SatI	GCNGC	2 cut(s)	1413, 1452
Sau3AI	GATC	1 cut(s)	1295
Sau96I	GGNCC	1 cut(s)	1461
ScaI	AGTACT	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	1309
SduI	GDGCHC	1 cut(s)	1305
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	1432
SmoI	CTYRAG	1 cut(s)	1432
SnaBI	TACGTA	1 cut(s)	838
Sse9I	AATT	5 cut(s)	145, 152, 166, 196, 1387
SseBI	AGGCCT	1 cut(s)	25
SspI	AATATT	1 cut(s)	1427
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	1307
StyI	CCWWGG	2 cut(s)	9, 20
TaaI	ACNGT	2 cut(s)	85, 1107
TaiI	ACGT	4 cut(s)	792, 840, 984, 1032
TaqI	TCGA	1 cut(s)	1456
TasI	AATT	5 cut(s)	145, 152, 166, 196, 1387
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	1 cut(s)	1415
TfiI	GAWTC	1 cut(s)	1373
Tru1I	TTAA	1 cut(s)	1433
Tru9I	TTAA	1 cut(s)	1433
TscAI	CASTG	2 cut(s)	48, 1110
TseFI	GTSAC	6 cut(s)	309, 723, 963, 1038, 1086, 1107
TseI	GCWGC	1 cut(s)	1451
Tsp45I	GTSAC	6 cut(s)	309, 723, 963, 1038, 1086, 1107
TspGWI	ACGGA	4 cut(s)	231, 618, 711, 951
TspRI	CASTG	2 cut(s)	48, 1110
Vha464I	CTTAAG	1 cut(s)	1432
VneI	GTGCAC	1 cut(s)	1301
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmiI	GTMKAC	6 cut(s)	303, 588, 792, 840, 984, 1128
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.