Rmu_ssc0000089.1_g000031

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000089.1
Physical Location & Seq
Reverse (-)
217730 .. 218629
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000089.1_g000031.1.cds

Sequence Viewer

Length: 900 bp
atgggagccttgggacagccaaggccttattggctcattttagtgttttatggtttggcattgtgcttcttagcaagtcctactgttcttgctactttcacttttattccaccactatttcctctattccctcttccgaagcatcaattaccaccaccaaattatcctaattaccctccacaacattacaagtcaccaccacccccgccacctccatcaccttcaccaccacccccgccacccccatcaccttcacctcctcctccctatgtctataagtctcctccacccccatcaccttcaccgccacctccatatgtatacaagtctccaccacccccatcaccttcaccaccacctccttatcttttcaagtctccaccacccccgtcaccttcacctcctcctccctatgtctacaagtctccaccacccccatcaccttcacctccacctccatatgtatacaagtctccaccacctccatcaccttcacctcctcctccttatgtctacaagtctcctccacccccatcaccttcaccgccacctccatatgtatacaagtctccaccacccccatcaccttcaccaccaccgccatacatttataaatcaccaccaccgcaatctgcgtcaccacctcctccttatgtttacaagtctccaccaccaccatctccatcacctcctcctccttacgtctacaagtctccacccccaccatcaccctcaccacctccaccttccccatcaccgccacctccatatgtctataagtctccccctccaccatctccctcacctcctcccccttatctctacaagtctcctcctcccccatctcactctccaccaccatactactacaagtcccctccacctccaaaccactactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.1

Weight (kDa)

9.64

Isoelectric Point (pI)

161.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccI GTMKAC 6 cut(s) 321, 417, 465, 513, 561, 705
AciI CCGC 7 cut(s) 206, 236, 305, 545, 599, 626, 758
AgsI TTSAA 1 cut(s) 373
AoxI GGCC 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 9, 20
BseDI CCNNGG 2 cut(s) 9, 20
BshFI GGCC 1 cut(s) 25
BslFI GGGAC 2 cut(s) 27, 859
BsmFI GGGAC 2 cut(s) 27, 859
BsnI GGCC 1 cut(s) 25
BspACI CCGC 7 cut(s) 206, 236, 305, 545, 599, 626, 758
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 9, 20
BssNAI GTATAC 3 cut(s) 322, 466, 562
BssT1I CCWWGG 2 cut(s) 9, 20
Bst1107I GTATAC 3 cut(s) 322, 466, 562
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstZ17I GTATAC 3 cut(s) 322, 466, 562
BsuRI GGCC 1 cut(s) 25
CseI GACGC 1 cut(s) 624
CviJI RGCY 4 cut(s) 8, 19, 25, 34
CviKI_1 RGCY 4 cut(s) 8, 19, 25, 34
DdeI CTNAG 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 9, 20
Eco147I AGGCCT 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 9, 20
ErhI CCWWGG 2 cut(s) 9, 20
FaqI GGGAC 2 cut(s) 27, 859
FauI CCCGC 2 cut(s) 213, 243
FauNDI CATATG 4 cut(s) 316, 460, 556, 769
FblI GTMKAC 6 cut(s) 321, 417, 465, 513, 561, 705
HaeIII GGCC 1 cut(s) 25
HgaI GACGC 1 cut(s) 624
Hpy166II GTNNAC 7 cut(s) 322, 418, 466, 514, 562, 658, 706
Hpy188I TCNGA 1 cut(s) 138
Hpy8I GTNNAC 7 cut(s) 322, 418, 466, 514, 562, 658, 706
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 702
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 702
LmnI GCTCC 1 cut(s) 5
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 192, 390, 636
MboII GAAGA 1 cut(s) 125
MluCI AATT 3 cut(s) 146, 160, 169
MslI CAYNNNNRTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 4 cut(s) 316, 460, 556, 769
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 3 cut(s) 192, 390, 636
PceI AGGCCT 1 cut(s) 25
PsiI TTATAA 1 cut(s) 612
PspN4I GGNNCC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 41
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 3 cut(s) 146, 160, 169
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 7 cut(s) 206, 236, 305, 545, 599, 626, 758
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 2 cut(s) 9, 20
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 705
TasI AATT 3 cut(s) 146, 160, 169
TseFI GTSAC 3 cut(s) 192, 390, 636
Tsp45I GTSAC 3 cut(s) 192, 390, 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmiI GTMKAC 6 cut(s) 321, 417, 465, 513, 561, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.