Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004531

Physical Location & Seq

Genomic Coordinates Reverse (-)

56301041 .. 56306031

Gene Structure 4991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034869

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGAGCCTTGGGACAGCCAAGGCCTTCTTGGGTCATTACAATGTTTTATTGTTTGGCATTGAGCTTCTTAGCTAGTACTGCTGTTCATGCTAGCAATCCTTACACTTATTCTTCACCACCACCTCCTCACCATGCCACTCAATACCCTCCTCCCAAGTATCAATCACCACCACCGAAATATGCCAAGCACCCTCCACCTCCACCAAAGTCACCTCCTCCCCCACCTCCACCAAAGCATGTGATACATCCTCCATATCATTACAAATCCCCTCCTCCTCCATCACCATCACCGCCGCCACCCCACCATGAACGACGCCAATGTCTCCAAGCACATCCAGCAGATGGTGAGGTTCATTGGCTAAGAAGCCGAGGAAAAGGCCAACGAAATCCAACATATGTTGTGGTTCTTCATGACACCGACTTCAGCGACGATGCGGCGGAGAAAGAGGAGGCTACGGTGCCTTCAGGACTACATGCAGAAGGTGCCGGAAAAGCTTCCTCGGATGGCTTTGGGGCTGGAGGTTTCATGCGCGCCAGTTTCAAGGAAGGTGACGACAAAGGCGGTTGGTTTCACTCCAGACGATGGCGACCTTTGTGGCGACCATTGATGGGTGGGAGGCTTCGATGTAGAGACCCTTACCTGTTTCGGGTTGAGGTCGGCATGTGTTGCAGCTCATCCTTCATCTTCTGGGTGGTGACGCGAGATGGTTGGGCGGCTGAACGGAGCGGTGGAGTCGATGAAAGGTCACAGCGGCAGCAGGTGTGTGCCGAGCATAAAGGCCTTTGGGCTGTGGAGAGAAGATGGGCTGGGCTTAACTATTGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

30.86

Weight (kDa)

9.4

Isoelectric Point (pI)

70.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09800
prunus_persica	Prupe.4G245400_v2.0.a1 Prupe.4G245500_v2.0.a1
pyrus_communis	pycom03g13480
rosa_chinensis	RchiOBHm_Chr5g0051641 RchiOBHm_Chr5g0051651
rosa_laevigata	RLG00000006362 RLG00000012790 RLG00000014729 RLG00000034869 RLG00000037111
rosa_multiflora	Rmu_sc0014445.1_g000009 Rmu_ssc0000089.1_g000031 Rmu_ssc0000089.1_g000033
rosa_roxburghii	Rroxscaffold_1G00027110 Rroxscaffold_1G00027130 Rroxscaffold_1G00027160
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh5AG349900 Rh5BG361600 Rh5BG361700 Rh5CG386200 Rh5CG386300 Rh5CG386400 Rh5CG386500 Rh5DG376500 Rh5DG376600 Rh7DG483600
rosa_wichuraiana	Rw0G013450 Rw0G013460 Rw5G033080 Rw5G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	751
AasI	GACNNNNNNGTC	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	751
AccB1I	GGYRCC	2 cut(s)	460, 485
AccB7I	CCANNNNNTGG	2 cut(s)	344, 585
AccBSI	CCGCTC	1 cut(s)	729
AccII	CGCG	2 cut(s)	534, 703
AciI	CCGC	8 cut(s)	293, 296, 437, 440, 564, 716, 729, 754
AcuI	CTGAAG	2 cut(s)	409, 450
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	4 cut(s)	344, 585, 611, 649
AgsI	TTSAA	1 cut(s)	544
AluBI	AGCT	4 cut(s)	66, 74, 497, 675
AluI	AGCT	4 cut(s)	66, 74, 497, 675
Alw26I	GTCTC	2 cut(s)	329, 627
AoxI	GGCC	4 cut(s)	23, 379, 781, 825
ApeKI	GCWGC	2 cut(s)	672, 757
Asp700I	GAANNNNTTC	1 cut(s)	496
AspLEI	GCGC	2 cut(s)	534, 536
AspS9I	GGNCC	1 cut(s)	825
AsuHPI	GGTGA	9 cut(s)	108, 122, 159, 204, 276, 282, 359, 563, 709
AsuNHI	GCTAGC	1 cut(s)	92
BanI	GGYRCC	2 cut(s)	460, 485
BbvI	GCAGC	2 cut(s)	684, 769
BccI	CCATC	8 cut(s)	289, 295, 338, 500, 579, 604, 701, 798
BcoDI	GTCTC	2 cut(s)	329, 627
BfaI	CTAG	3 cut(s)	75, 93, 829
BfuAI	ACCTGC	1 cut(s)	751
BisI	GCNGC	6 cut(s)	296, 438, 673, 717, 755, 758
BlsI	GCNGC	6 cut(s)	297, 439, 674, 718, 756, 759
BmcAI	AGTACT	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	3 cut(s)	7, 462, 487
BmsI	GCATC	1 cut(s)	424
BmtI	GCTAGC	1 cut(s)	96
BpmI	CTGGAG	2 cut(s)	540, 562
BsaHI	GRCGYC	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	4 cut(s)	9, 20, 370, 501
Bsc4I	CCNNNNNNNGG	4 cut(s)	344, 585, 611, 649
Bse1I	ACTGG	1 cut(s)	537
BseDI	CCNNGG	4 cut(s)	9, 20, 370, 501
BseGI	GGATG	4 cut(s)	247, 334, 511, 677
BseLI	CCNNNNNNNGG	4 cut(s)	344, 585, 611, 649
BseNI	ACTGG	1 cut(s)	537
BsePI	GCGCGC	1 cut(s)	532
BseRI	GAGGAG	6 cut(s)	117, 141, 207, 264, 267, 464
BseXI	GCAGC	2 cut(s)	684, 769
BseYI	CCCAGC	1 cut(s)	809
Bsh1236I	CGCG	2 cut(s)	534, 703
BshFI	GGCC	4 cut(s)	25, 381, 783, 827
BshNI	GGYRCC	2 cut(s)	460, 485
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	4 cut(s)	344, 585, 611, 649
BsmAI	GTCTC	2 cut(s)	329, 627
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	4 cut(s)	25, 381, 783, 827
Bso31I	GGTCTC	1 cut(s)	627
BspACI	CCGC	8 cut(s)	293, 296, 437, 440, 564, 716, 729, 754
BspANI	GGCC	4 cut(s)	25, 381, 783, 827
BspFNI	CGCG	2 cut(s)	534, 703
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	3 cut(s)	7, 462, 487
BspMI	ACCTGC	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	96
BspT107I	GGYRCC	2 cut(s)	460, 485
BspTNI	GGTCTC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	729
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	4 cut(s)	9, 20, 370, 501
BssHII	GCGCGC	1 cut(s)	532
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	2 cut(s)	9, 20
Bst4CI	ACNGT	1 cut(s)	460
BstACI	GRCGYC	1 cut(s)	316
BstAPI	GCANNNNNTGC	2 cut(s)	485, 669
BstC8I	GCNNGC	2 cut(s)	94, 534
BstDEI	CTNAG	2 cut(s)	70, 362
BstF5I	GGATG	4 cut(s)	247, 334, 511, 677
BstFNI	CGCG	2 cut(s)	534, 703
BstHHI	GCGC	2 cut(s)	534, 536
BstMAI	GTCTC	2 cut(s)	329, 627
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 89, 338, 485, 494, 669
BstNSI	RCATGY	3 cut(s)	242, 479, 667
BstUI	CGCG	2 cut(s)	534, 703
BstV1I	GCAGC	2 cut(s)	684, 769
BsuRI	GGCC	4 cut(s)	25, 381, 783, 827
BtsCI	GGATG	4 cut(s)	247, 334, 511, 677
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	2 cut(s)	94, 534
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	534, 536
Cfr13I	GGNCC	1 cut(s)	825
CseI	GACGC	2 cut(s)	324, 709
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	8 cut(s)	89, 134, 239, 308, 413, 476, 529, 664
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	70, 362
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	9, 20
Eco147I	AGGCCT	2 cut(s)	25, 783
Eco31I	GGTCTC	1 cut(s)	627
Eco57I	CTGAAG	2 cut(s)	409, 450
EcoT14I	CCWWGG	2 cut(s)	9, 20
ErhI	CCWWGG	2 cut(s)	9, 20
FaeI	CATG	8 cut(s)	92, 137, 242, 311, 416, 479, 532, 667
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	8 cut(s)	88, 133, 238, 307, 412, 475, 528, 663
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	6 cut(s)	296, 438, 673, 717, 755, 758
FokI	GGATG	4 cut(s)	234, 321, 518, 664
Fsp4HI	GCNGC	6 cut(s)	296, 438, 673, 717, 755, 758
FspBI	CTAG	3 cut(s)	75, 93, 829
GlaI	GCGC	2 cut(s)	533, 535
GluI	GCNGC	6 cut(s)	296, 438, 673, 717, 755, 758
GsaI	CCCAGC	1 cut(s)	813
GsuI	CTGGAG	2 cut(s)	540, 562
HaeIII	GGCC	4 cut(s)	25, 381, 783, 827
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	2 cut(s)	324, 709
HhaI	GCGC	2 cut(s)	534, 536
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	8 cut(s)	92, 137, 242, 311, 416, 479, 532, 667
Hin6I	GCGC	2 cut(s)	532, 534
HinP1I	GCGC	2 cut(s)	532, 534
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	1 cut(s)	735
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	9 cut(s)	108, 122, 159, 204, 276, 282, 359, 563, 709
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	3 cut(s)	413, 468, 579
Hpy99I	CGWCG	2 cut(s)	318, 434
HpyAV	CCTTC	5 cut(s)	36, 474, 476, 542, 691
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	2 cut(s)	479, 672
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 89, 338, 485, 494, 669
HpyF3I	CTNAG	2 cut(s)	70, 362
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	8 cut(s)	92, 137, 242, 311, 416, 479, 532, 667
HspAI	GCGC	2 cut(s)	532, 534
LmnI	GCTCC	2 cut(s)	5, 726
Lsp1109I	GCAGC	2 cut(s)	684, 769
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	75, 93, 829
MaeIII	GTNAC	4 cut(s)	210, 551, 697, 747
MbiI	CCGCTC	1 cut(s)	729
MboII	GAAGA	4 cut(s)	105, 401, 679, 813
MlyI	GAGTC	1 cut(s)	744
MmeI	TCCRAC	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	1 cut(s)	816
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	754
MspI	CCGG	1 cut(s)	489
MvnI	CGCG	2 cut(s)	534, 703
MwoI	GCNNNNNNNGC	6 cut(s)	80, 89, 338, 485, 494, 669
NdeI	CATATG	1 cut(s)	397
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	8 cut(s)	92, 137, 242, 311, 416, 479, 532, 667
NlaIV	GGNNCC	3 cut(s)	7, 462, 487
NmeAIII	GCCGAG	2 cut(s)	395, 796
NmuCI	GTSAC	4 cut(s)	210, 551, 697, 747
NspI	RCATGY	3 cut(s)	242, 479, 667
PagI	TCATGA	1 cut(s)	412
PaqCI	CACCTGC	1 cut(s)	751
PauI	GCGCGC	1 cut(s)	532
PceI	AGGCCT	2 cut(s)	25, 783
PdmI	GAANNNNTTC	1 cut(s)	496
PflMI	CCANNNNNTGG	2 cut(s)	344, 585
PkrI	GCNGC	6 cut(s)	297, 439, 674, 718, 756, 759
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PspFI	CCCAGC	1 cut(s)	809
PspN4I	GGNNCC	3 cut(s)	7, 462, 487
PspPI	GGNCC	1 cut(s)	825
PteI	GCGCGC	1 cut(s)	532
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	816
SatI	GCNGC	6 cut(s)	296, 438, 673, 717, 755, 758
Sau96I	GGNCC	1 cut(s)	825
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	1 cut(s)	744
SfaNI	GCATC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	41
SseBI	AGGCCT	2 cut(s)	25, 783
SsiI	CCGC	8 cut(s)	293, 296, 437, 440, 564, 716, 729, 754
SspMI	CTAG	3 cut(s)	75, 93, 829
StuI	AGGCCT	2 cut(s)	25, 783
StyI	CCWWGG	2 cut(s)	9, 20
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	625, 738
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	4 cut(s)	298, 440, 719, 757
Tru1I	TTAA	1 cut(s)	816
Tru9I	TTAA	1 cut(s)	816
TseFI	GTSAC	4 cut(s)	210, 551, 697, 747
TseI	GCWGC	2 cut(s)	672, 757
Tsp45I	GTSAC	4 cut(s)	210, 551, 697, 747
TspDTI	ATGAA	7 cut(s)	77, 324, 344, 401, 517, 673, 756
TspGWI	ACGGA	1 cut(s)	739
Van91I	CCANNNNNTGG	2 cut(s)	344, 585
XceI	RCATGY	3 cut(s)	242, 479, 667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	3 cut(s)	75, 93, 829
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.