RLG00000037111

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004531
Physical Location & Seq
Forward (+)
88482488 .. 88483498
1011 bp
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UTR
Exon/CDS
Intron
RLM00000037111

Sequence Viewer

Length: 411 bp
ATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCTCCATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTGTGGAACAATTAGGAGATTCTCTAGAAGAAATACGGGGTTCCGCTTCTGGCGGCAACATGCTATGGGGTGGTGGTCCCGCTTATGGGGTCAAATCAATACGTTCTAAGAAGAAATATTTGAATATAAATCTCATCGATATCATCGATTTCATAATATTTCTGAACAAGTTCCTGGATAACAAGCCCAAGGGTTTTCTTGTTGATGATAGTGACGATATTGATGATAGTGACGATATCGGCCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCTAACTATGGATATGATGCGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF825

Protein Analysis

137

Amino Acids

15.51

Weight (kDa)

4.55

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 87 1.5e-49 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 141, 150, 177, 403
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 182, 183, 352
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 358, 364
AluI AGCT 2 cut(s) 358, 364
AoxI GGCC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 64
Asp700I GAANNNNTTC 2 cut(s) 68, 266
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 173
BccI CCATC 2 cut(s) 16, 61
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 57
BfaI CTAG 2 cut(s) 92, 122
BfuI GTATCC 1 cut(s) 57
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 139, 175
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 380
Bsa29I ATCGAT 2 cut(s) 234, 243
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 183, 352
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 272
BseCI ATCGAT 2 cut(s) 234, 243
BseDI CCNNGG 1 cut(s) 285
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 182, 183, 352
BseX3I CGGCCG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 1 cut(s) 339
BshVI ATCGAT 2 cut(s) 234, 243
BsiEI CGRYCG 1 cut(s) 340
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 182, 183, 352
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 1 cut(s) 339
BspACI CCGC 4 cut(s) 141, 150, 177, 403
BspANI GGCC 1 cut(s) 339
BspDI ATCGAT 2 cut(s) 234, 243
BspLI GGNNCC 2 cut(s) 139, 175
BssECI CCNNGG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 385
BstMCI CGRYCG 1 cut(s) 340
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 270
BstZI CGGCCG 1 cut(s) 337
Bsu15I ATCGAT 2 cut(s) 234, 243
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 339
BsuTUI ATCGAT 2 cut(s) 234, 243
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 2 cut(s) 234, 243
CviAII CATG 2 cut(s) 16, 157
CviJI RGCY 4 cut(s) 283, 339, 358, 364
CviKI_1 RGCY 4 cut(s) 283, 339, 358, 364
DdeI CTNAG 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 337
EagI CGGCCG 1 cut(s) 337
EclXI CGGCCG 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 285
Eco32I GATATC 2 cut(s) 238, 334
Eco47I GGWCC 1 cut(s) 173
Eco52I CGGCCG 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 2 cut(s) 238, 334
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 19, 160
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 15, 156
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 2 cut(s) 92, 122
GlaI GCGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 1 cut(s) 339
HhaI GCGC 1 cut(s) 385
Hin1II CATG 2 cut(s) 19, 160
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 3 cut(s) 4, 82, 116
Hpy188I TCNGA 2 cut(s) 58, 261
Hpy188III TCNNGA 2 cut(s) 38, 122
HpyCH4IV ACGT 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 19, 160
HspAI GCGC 1 cut(s) 383
LmnI GCTCC 2 cut(s) 355, 361
LpnPI CCDG 6 cut(s) 23, 58, 132, 257, 284, 344
LweI GCATC 1 cut(s) 390
MaeI CTAG 2 cut(s) 92, 122
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 308, 326, 341
MboII GAAGA 2 cut(s) 137, 220
MluCI AATT 2 cut(s) 64, 107
MnlI CCTC 1 cut(s) 60
MroXI GAANNNNTTC 2 cut(s) 68, 266
MseI TTAA 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 272
NlaIII CATG 2 cut(s) 19, 160
NlaIV GGNNCC 2 cut(s) 139, 175
NmuCI GTSAC 3 cut(s) 308, 326, 341
NspI RCATGY 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 2 cut(s) 68, 266
PfeI GAWTC 3 cut(s) 4, 82, 116
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 139, 175
PspPI GGNCC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 272
SetI ASST 5 cut(s) 47, 202, 348, 360, 366
SfaNI GCATC 1 cut(s) 390
SinI GGWCC 1 cut(s) 173
Sse9I AATT 2 cut(s) 64, 107
SsiI CCGC 4 cut(s) 141, 150, 177, 403
SspI AATATT 2 cut(s) 215, 255
SspMI CTAG 2 cut(s) 92, 122
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 285
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 234, 243
TasI AATT 2 cut(s) 64, 107
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 3 cut(s) 4, 82, 116
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseFI GTSAC 3 cut(s) 308, 326, 341
Tsp45I GTSAC 3 cut(s) 308, 326, 341
TspDTI ATGAA 2 cut(s) 238, 392
TspGWI ACGGA 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 64
XbaI TCTAGA 1 cut(s) 121
XceI RCATGY 1 cut(s) 160
XmnI GAANNNNTTC 2 cut(s) 68, 266
XspI CTAG 2 cut(s) 92, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.