RchiOBHm_Chr4g0411461

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
35327843 .. 35331665
3823 bp
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UTR
Exon/CDS
Intron
PRQ38226

Sequence Viewer

Length: 246 bp
ATGGCAGCTTGGAGACTCTCCTCCTTACTCTCTCACTCTCTCTCTGCTGGGTCTGCTTCTAAGCTTCTCTCTCAAGGTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTACATATCTTGGCCTTTGGTGTGGCAGAATATTACTTGCATGACATACTTTCTCCACCAAATGGTATGGCAGAATATTACTTGCATGACATACTTTCTCCACCAAATGGTATGGCAGAATATTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.38

Weight (kDa)

7.76

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 178, 223
AfiI CCNNNNNNNGG 2 cut(s) 178, 223
AluBI AGCT 2 cut(s) 8, 64
AluI AGCT 2 cut(s) 8, 64
Alw26I GTCTC 1 cut(s) 7
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 5, 96
BbvI GCAGC 2 cut(s) 17, 108
BcoDI GTCTC 1 cut(s) 7
BisI GCNGC 2 cut(s) 6, 97
BlsI GCNGC 2 cut(s) 7, 98
BpuEI CTTGAG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 223
BseLI CCNNNNNNNGG 2 cut(s) 178, 223
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 17, 108
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 178, 223
BsmAI GTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 130
BspANI GGCC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 17, 108
BsuRI GGCC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 82
CviAII CATG 2 cut(s) 157, 202
CviJI RGCY 3 cut(s) 8, 64, 130
CviKI_1 RGCY 3 cut(s) 8, 64, 130
DdeI CTNAG 1 cut(s) 60
FaeI CATG 2 cut(s) 160, 205
FaiI YATR 9 cut(s) 93, 101, 122, 158, 163, 184, 203, 208, 229
FatI CATG 2 cut(s) 156, 201
Fnu4HI GCNGC 2 cut(s) 6, 97
Fsp4HI GCNGC 2 cut(s) 6, 97
GluI GCNGC 2 cut(s) 6, 97
GsaI CCCAGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 130
Hin1II CATG 2 cut(s) 160, 205
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 80, 156, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 160, 205
LpnPI CCDG 2 cut(s) 33, 66
Lsp1109I GCAGC 2 cut(s) 17, 108
MaeIII GTNAC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 9
MnlI CCTC 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 160, 205
NmuCI GTSAC 1 cut(s) 107
PflMI CCANNNNNTGG 2 cut(s) 178, 223
PkrI GCNGC 2 cut(s) 7, 98
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 47
SatI GCNGC 2 cut(s) 6, 97
SchI GAGTC 1 cut(s) 9
SetI ASST 3 cut(s) 10, 66, 79
SgeI CNNG 9 cut(s) 21, 60, 86, 93, 138, 165, 169, 210, 214
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SspI AATATT 3 cut(s) 148, 193, 238
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 2 cut(s) 5, 96
Tsp45I GTSAC 1 cut(s) 107
Van91I CCANNNNNTGG 2 cut(s) 178, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.