Rh2CG317800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016435
Physical Location & Seq
Forward (+)
40678770 .. 40679090
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG317800.1

Sequence Viewer

Length: 321 bp
ATGTCCGGATCCACCGACGAGGAACAACGTCAGCCAACCTGCTGCCCCTCCAAGTCAGAATCAGGAGAACAAGCGGACCCCTACACTCAATACCGGAATCCGACCTCGCACGGACCCGATAAGCGCATCGCAATCACGGCGACCTGTCCGATCCACTGGTCTTCCTCCACCGCCGAAAGACCCACGACGTCCTCCGAGATCTGGTCCACCCATAGCCCAAGACAGTCGCCAAAAGCCAGCCAGGAACGCCGACTCCGTTGCCCACCAAAACTCGAGCGACCAGAATCCAATAGCGAGGCCAACTCTACTCAAGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.7

Weight (kDa)

6.82

Isoelectric Point (pI)

76.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 47
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 2 cut(s) 74, 171
AclWI GGATC 3 cut(s) 3, 16, 145
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 201
AjnI CCWGG 1 cut(s) 240
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AlwI GGATC 3 cut(s) 3, 16, 145
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 3 cut(s) 76, 113, 204
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 3 cut(s) 76, 113, 204
BamHI GGATCC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 153
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 242
BfaI CTAG 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 47
BglII AGATCT 1 cut(s) 198
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 3 cut(s) 76, 113, 204
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 76, 113, 204
BmiI GGNNCC 3 cut(s) 10, 78, 115
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpuEI CTTGAG 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 5, 93
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 6, 94
BslI CCNNNNNNNGG 1 cut(s) 201
BsnI GGCC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 3 cut(s) 8, 150, 198
BspACI CCGC 2 cut(s) 74, 171
BspANI GGCC 1 cut(s) 299
BspEI TCCGGA 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 10, 78, 115
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 3 cut(s) 3, 16, 145
BsrI ACTGG 1 cut(s) 161
BssMI GATC 3 cut(s) 8, 150, 198
BssNI GRCGYC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 238
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 3 cut(s) 11, 153, 201
BstMBI GATC 3 cut(s) 8, 150, 198
BstMWI GCNNNNNNNGC 2 cut(s) 137, 246
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 8, 198
BstYI RGATCY 2 cut(s) 8, 198
BsuRI GGCC 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 76, 113, 204
CviJI RGCY 6 cut(s) 34, 216, 236, 240, 299, 318
CviKI_1 RGCY 6 cut(s) 34, 216, 236, 240, 299, 318
DpnI GATC 3 cut(s) 10, 152, 200
DpnII GATC 3 cut(s) 8, 150, 198
Eco47I GGWCC 3 cut(s) 76, 113, 204
Eco88I CYCGRG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 240
FaiI YATR 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 319
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 6, 94
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 4 cut(s) 59, 97, 252, 284
HpaII CCGG 2 cut(s) 6, 94
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 4 cut(s) 58, 102, 150, 196
Hpy188III TCNNGA 2 cut(s) 6, 63
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 2 cut(s) 20, 190
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 2 cut(s) 28, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 246
HpySE526I ACGT 2 cut(s) 28, 188
Hsp92I GRCGYC 1 cut(s) 188
HspAI GCGC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 5
Kzo9I GATC 3 cut(s) 8, 150, 198
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 319
MaeII ACGT 2 cut(s) 28, 188
MalI GATC 3 cut(s) 10, 152, 200
MboI GATC 3 cut(s) 8, 150, 198
MboII GAAGA 1 cut(s) 153
MflI RGATCY 2 cut(s) 8, 198
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 6 cut(s) 13, 58, 115, 175, 202, 289
MroI TCCGGA 1 cut(s) 5
MspI CCGG 2 cut(s) 6, 94
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 137, 246
NdeII GATC 3 cut(s) 8, 150, 198
NlaIV GGNNCC 3 cut(s) 10, 78, 115
PaeR7I CTCGAG 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 3 cut(s) 59, 97, 284
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 10, 78, 115
PspPI GGNCC 3 cut(s) 76, 113, 204
PspXI VCTCGAGB 1 cut(s) 272
PsuI RGATCY 2 cut(s) 8, 198
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 3 cut(s) 8, 150, 198
Sau96I GGNCC 3 cut(s) 76, 113, 204
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 242
SetI ASST 6 cut(s) 31, 41, 107, 146, 191, 316
SfaNI GCATC 1 cut(s) 135
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 3 cut(s) 76, 113, 204
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 272, 309
SmoI CTYRAG 2 cut(s) 272, 309
SsiI CCGC 2 cut(s) 74, 171
SspMI CTAG 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 2 cut(s) 31, 191
TaqI TCGA 1 cut(s) 273
TfiI GAWTC 3 cut(s) 59, 97, 284
TscAI CASTG 1 cut(s) 161
TseI GCWGC 1 cut(s) 42
TspGWI ACGGA 2 cut(s) 126, 245
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 3 cut(s) 76, 113, 204
XhoI CTCGAG 1 cut(s) 272
XspI CTAG 1 cut(s) 319
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.